Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0313 ATGATCATGATGGCTCTTACAATCATCATCTTTCTCATATCTATTGCTTCACAAGCTTCAATAAACATGTTGTTAACTACAACAATGGCCATGCCATTAAGTTCTGAGACTGATAAGCTTGCTTTGTTGACTTTGAAGGACAAGCTTACTAATGGTGACTCAAATGTTCTTCCATCATGGAATGAGTCTCTTCATTTCTGTGAATGGCAGGGCGTTACATGTGGTCGCCGCCACAAGAGAGTCTCAGCATTGCATTTGCAAAATCAAGACTTGGGTGGTACTCTTGCACCATCATTAGGAAATCTAACCTTCCTCAAGAAGCTCAATCTTACTGACCTCAACTTGTACGGTCAGATTCCAAGACAAGTTGGTCGTTTAAAGAGGCTGCAGATTCTTAGCTTCCAGCAGAATCATCTTCATGGTGAGGTTCCCCGGGAAGTTGGTCGATTGAAGTCGTTGTACGCTCTCGAACTAACGAGAAATAATCTTCAAGGTGAGATTCCTATGGAGCTAATCAACTGCTCAAGTCTTAAGAAAATTGACTTGTCCTACAACAATTTAACTGGGAAAGTTCCATCATGGTTTGGATCCATGATGCAACTTACTATGTTGGAGCTTGGATTCAATAATCTAGTTGGTAATATCCCACCAACCTTGGGGAATCTTTCATCACTTGATACATTGTATCTTGCAGGAAACAATTTGGAAGGTCCTATAATTCATGCTTTGGGAAGGTTGTCAAATTTGGAGTACCTCTCTTTGAGTACCAATAATTTGTCAGGCCAAGTTCCTAATGCATTCTACAACCTTTCAAATCTTCAAGTTCTTGATATAAGTAACAACAAATTAATGGGTCCTATTTCTTCAAATTTACATCTTGCTTTTCCCAATCTGTCTGTTTTTGTTGTTGCATCAAATCAATTCACTGACAACTTCCCATCTTCATTATGCAATCTGACAAGATTGATAGAATTTGATTTATCATTCAATAATTTTAGAGGGCTAATTCCTCCTACTTGGGGAAGCTCAAATAATCTTATCTACTTTGGCATTAATTACAATGGTCTAATAGGAAGTGGGAAAGCTCAAGATTTGGATTTCCTTTCCTCTTTAACCAATTGCACTCAGTTGTCATATTTGATTTTGCAAGGAAATAATCTTGGTGGTGTATTGCCAAATCTCATAGGCAACTTCTCTACCAATCTCACTGTGCTTGATATAGCCCATAATCAAATATCTGGAAGCTTGCCTCAAGAAATTGGAAACTTGGTCGGCTTAGGTTTACTTGCTATGAATAAAAATTCCCTTGAGGGAACAATTCCAGATTCAATTGGGAATCTTAAAAATCTAGTAAGATTATCCTTGGATGATAACAATCTCTCAGGTAATATTCCTGTTGCCATTGGCAATCTTACTATGCTGTCAGAAGTTTATATGGACTCAAATAATCTTGAGGGAAGCATTCCATTTACCTTAAGATATTGCACAAATATGCAGACTTTCGCTGCCGGGAACAACAATTTAAGTGGTAGCATACCAACTCAAACCTTTGAATACCAACAAGGTTTAGTAAATCTTGATTTAGCCAGCAACTCCATTACTGGTCCAATCCCTCCAGAGTTTGGTAACCTGAAGCATCTTTCTAAATTGTATCTATTTTCAAACAAGTTGTCTGGTGTCATTCCCATTGAACTTGGTGCTTGTTCTGCATTGATAGAGCTTTATCTAGATGTAAACTTCTTCCATGGAAATATACCTTCCTTCTTGGGTTCTCTAAGATCACTTGAATTCTTAGGACTTTCCAACAACAGCTTCTCAGGCACAATCCCACATGAACTTGAAAACTTGACACAATTGAATGCATTGGACCTTTCCAATAACCAGCTCTATGGCAAGGTTCCATTAGGAGGAATCTTTAGTAACATCACAGCAATATCACTCATTGGAAACAAGGATCTCTGTGGTGGGATAACTCAACTGAATTTCCCTCCATGTCCAAAGTTGCCCTCAAATAAACACAAGAGCTCTCTTAGAAAGAAAATTATTGTCATCAGTGTTATTGGAGGGATTTTGATCTCGTTCATTATTTTTGTTAGCATCTATTGTTTCATGAGGAAGCCCAAGAAGTTACCTTTTTTGCCATCATTGGAACATAAGTACTTGAGGGTTTCTTATGGAGAGCTACATCAAGCAACAAATGGATTTTCTTCATCCAATTTAGTTGGCACAGGAAGTTTTGGTTCTGTGTATAGAGGAACCCTTGTTCATTTTGAGAGACCTGTTGCRGTSAAAGTGTTGAACCTTCAAACACGCGGSGCATCAAAGAGTTTCATGGCCGAATGCAAAGCTCTAGGAAAAATCAAGCACAGAAACCTTATCAACATATTGACTTGTTGTTCAAGTGTTGATTACAAAGGGGATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGTTACACCACACTATTGAAGATAGCGAGTCAACAAGTCCAAGTCTCAACCTGATGCAAAGAGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTTAGAGGAAGCTGTAGTTCATTGTGATATTAAGCCAAGCAATGTTTTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAGGCTTGTTCATGGTGTCGCAAGCCACTCTAGCAGTGATAAAGGAAGTTCCTCAGTAATCAAGGGAACCATCGGATATGTTCCACCAGAGTATGGAGCAGGTAGGTCAATATCAGCAAAAGGAGACATCTATAACTATGGAATTCTTCTTCTGGAGATAGTAACCGGAAAGAGACCAACGGATGGCATATTTGGTGAAGATCTAAGCCTACACAAGTTCTGTAAAATGGCAATTCTAGAAGGAATTTCTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGAGGAAAGAAGGGTTACACAACAGCAAAATATCAAGGAGTGTTTGGAGTCGTTTGCTAGGATTGGAGTTGCATGTTCCGAAGAATTTCCCTCTCAACGGATGAACATTAAAGATGTCATAATGGAGCTTCATGCAATTAAACACAAACTGCTTCCATAG 3129 0.3857 MIMMALTIIIFLISIASQASINMLLTTTMAMPLSSETDKLALLTLKDKLTNGDSNVLPSWNESLHFCEWQGVTCGRRHKRVSALHLQNQDLGGTLAPSLGNLTFLKKLNLTDLNLYGQIPRQVGRLKRLQILSFQQNHLHGEVPREVGRLKSLYALELTRNNLQGEIPMELINCSSLKKIDLSYNNLTGKVPSWFGSMMQLTMLELGFNNLVGNIPPTLGNLSSLDTLYLAGNNLEGPIIHALGRLSNLEYLSLSTNNLSGQVPNAFYNLSNLQVLDISNNKLMGPISSNLHLAFPNLSVFVVASNQFTDNFPSSLCNLTRLIEFDLSFNNFRGLIPPTWGSSNNLIYFGINYNGLIGSGKAQDLDFLSSLTNCTQLSYLILQGNNLGGVLPNLIGNFSTNLTVLDIAHNQISGSLPQEIGNLVGLGLLAMNKNSLEGTIPDSIGNLKNLVRLSLDDNNLSGNIPVAIGNLTMLSEVYMDSNNLEGSIPFTLRYCTNMQTFAAGNNNLSGSIPTQTFEYQQGLVNLDLASNSITGPIPPEFGNLKHLSKLYLFSNKLSGVIPIELGACSALIELYLDVNFFHGNIPSFLGSLRSLEFLGLSNNSFSGTIPHELENLTQLNALDLSNNQLYGKVPLGGIFSNITAISLIGNKDLCGGITQLNFPPCPKLPSNKHKSSLRKKIIVISVIGGILISFIIFVSIYCFMRKPKKLPFLPSLEHKYLRVSYGELHQATNGFSSSNLVGTGSFGSVYRGTLVHFERPVAVKVLNLQTRGASKSFMAECKALGKIKHRNLINILTCCSSVDYKGDDFKAIVFEFMPNGSLETLLHHTIEDSESTSPSLNLMQRVNIALDVAFALDYLHNDLEEAVVHCDIKPSNVLLDDDMVAHLGDFGLARLVHGVASHSSSDKGSSSVIKGTIGYVPPEYGAGRSISAKGDIYNYGILLLEIVTGKRPTDGIFGEDLSLHKFCKMAILEGISEIVDSRLLIPIDEQEERRVTQQQNIKECLESFARIGVACSEEFPSQRMNIKDVIMELHAIKHKLLP* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0313 1042 PRINTS Leucine-rich repeat signature 177 190 - -
Amo17g0313 1042 PRINTS Leucine-rich repeat signature 270 283 - -
Amo17g0313 1042 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Amo17g0313 1042 Gene3D Ribonuclease Inhibitor 191 293 IPR032675 -
Amo17g0313 1042 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 25 146 - -
Amo17g0313 1042 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 138 1040 - -
Amo17g0313 1042 Gene3D Phosphorylase Kinase; domain 1 715 816 - -
Amo17g0313 1042 SUPERFAMILY Protein kinase-like (PK-like) 709 1033 IPR011009 -
Amo17g0313 1042 SUPERFAMILY L domain-like 399 655 - -
Amo17g0313 1042 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Amo17g0313 1042 SMART serkin_6 735 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0313 1042 PANTHER LRR RECEPTOR-LIKE KINASE 25 146 - -
Amo17g0313 1042 PANTHER LRR RECEPTOR-LIKE KINASE 138 1040 - -
Amo17g0313 1042 Gene3D Ribonuclease Inhibitor 363 674 IPR032675 -
Amo17g0313 1042 SMART LRR_typ_2 246 269 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 400 423 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 544 568 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 447 471 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 616 641 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 592 615 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 319 342 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 270 297 IPR003591 -
Amo17g0313 1042 SMART LRR_typ_2 126 150 IPR003591 -
Amo17g0313 1042 SMART LRR_sd22_2 616 644 - -
Amo17g0313 1042 SMART LRR_sd22_2 270 293 - -
Amo17g0313 1042 SMART LRR_sd22_2 544 565 - -
Amo17g0313 1042 SMART LRR_sd22_2 198 224 - -
Amo17g0313 1042 SMART LRR_sd22_2 126 141 - -
Amo17g0313 1042 SMART LRR_sd22_2 447 466 - -
Amo17g0313 1042 SMART LRR_sd22_2 399 425 - -
Amo17g0313 1042 SMART LRR_sd22_2 246 261 - -
Amo17g0313 1042 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Amo17g0313 1042 Pfam Leucine rich repeat 173 211 IPR001611 GO:0005515
Amo17g0313 1042 Pfam Leucine rich repeat 506 557 IPR001611 GO:0005515
Amo17g0313 1042 Coils Coil 987 1007 - -
Amo17g0313 1042 SUPERFAMILY RNI-like 84 413 - -
Amo17g0313 1042 Pfam Protein kinase domain 737 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0313 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 867 879 IPR008271 GO:0004672|GO:0006468
Amo17g0313 1042 ProSiteProfiles Protein kinase domain profile. 735 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0313 1042 Gene3D Ribonuclease Inhibitor 294 362 IPR032675 -
Amo17g0313 1042 Gene3D Transferase(Phosphotransferase) domain 1 817 1040 - -
Amo17g0313 1042 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0313 Amo-Chr17 5020906 5024275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0313 33 1041 Receptor kinase-like Gene Family AT3G47570 43.713 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo17g0313 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0313 - - ahf:112766919 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0313 17 5020906 5024275 Amo07g0477 07 5264362 5267720 hybridization