Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0311 ATGCTCATATTGTCACCGTCACACTACAACAAAATAATGGTGTCTCTCATCATGTTTCTCCTATCTATGGCTTCACAAACCTTGGCTGTGAATGTGGCCTTGAGTACCGAGACTGATAAGATTGCTTTGCTTGTTTTGAAGGACAAGCTTACCAATGGCGATCCTCATGCTCTGTCATCATGGAATGAGTCTCTCCATTTCTGTGCATGGGAGGGCATTACATGCAGTCGCCGTCACATGAGAGTCTCAGCCTTGCAACTTCAAAATCAATATTGGGGAGGTACTATTGCGCCATCTTTGGGAAATCTGACGTTCCTAAGGGTGATCAATCTTACTAACATCAACTTGCATGGTGAGATTCCAAGAGAAGTTGGTCATTTGAAGAGACTGCAGTTTCTTGGCTTGAGCAACAATAATCTTCATGGAGAGATTCCTATAGAGATGATAAATTGTTCAAGCCTTGAGGTAATTATAATGTGGCAAAATAATCTAACTGGGAAAGTTCCTTCATGGTTGGGTTCTATGATGCAACTCACTCATCTGGGGCTTGCAGTCAACAATTTTGTTGGTAGTATCCCGCCTTCTTTGGGAAATCTTTCATCCCTTGAGGCGTTGTCACTTGGAGTTAATCATTTGGAAGGAAGAATAACTCCAGCTTTGGGTAGGTTGTCAAATTTGAAATTTTTGAGTTTAAGTTCAAATAATTTTTCTGGCCAAGTTACTCCTTCACTTTATAACCTTTCAAATATTCAAGTTCTTGATTTCGCTCGCAACCACTTAATGGGTACTCTTCTCTCAAATATACCTCTGGCCTTTCCCAATCTTAAGATGTTTACGTGTGGAGGGAACCGATTCATCGGTACTTTTCCATCTTCAATATCCAACCTTTCTGAGTTGCAACTATTTGATATCTCAGTAAATAATTTTCATGGACCAATTTCTCCTACCCTAGGGAGTTTACACAAACTCCAGATATTTAACGTTGGTCATAATAGATTCGGAAATGGAAGAGATCACGATTTGGATTTTCTTTTCTCATTGACTAATTGTACTCAATTGCAGAACCTAGACTTTTATGAAAATTATTTAGGGGGAGTATTGCCAGATATCATAGGCAACTTATCAACCAATCTTGTTTTGCTTGATATGGCGTTGAATCAAATATCTGGAAGGATACCAGAAGGAATTGGAAAACTAGTCAACCTAGCAACACTTGATATGGAGGAAAATTTCCTTGGGGGAACAATTCCAGATTCAATGGGAAAGCTAAAAAATCTGGGAGAGTTGTGGTTGAGTGAAAATAAGTTCTATGGCAACATCCCTCTTGTCATTGGTAACCTTACTATGTTGTCTGACGTTGATCTGAGCTCAAATGAATTTGAAGGACTCATTCCTTTTACACTTGGATACTGCACCAACATGCAAAAATTTTCTGCATCTGAAAACAACTTAAGTGGTAACATACCCAATCAAACATTTGGCAACCAGCAAGGCTTAATACAGTTGTTACTATACTCCAACTCTTTTACCGGCCCCATTCCTTCTGATCTTGGAAACTTGAACCATCTTCCCATCTTGGATTTACAAGATAACAAGCTCATTGGTGAGATTCCCACGAGACTTAGTGCTTGCACTGCTTTAACAGAGCTCGTACTAGAAAGAAACTCATTCCATGGAAGTATACCTTCATTCTTGGGATCTCTACTATCCCTTGAAATCTTAGACCTTTCTAATAACAACTTCTCAAGCACAATCCCTCATGAACTTGTGAATCTCACGTTTCTGAGTATGTTGAACGTATCTTTCAACCATCTCTATGGTGAAGTCCCGGTAGGAGGAGTATTTAATAATGTCACAGCAATATCACTCGTTGGAAACAAAGATCTTTGCGGTGGGATACCTCAATTGAATCTTCCTGCATGCCCTATGTTGCCCTCACAGAAGAGATCTCTCAAAAAGAGAGTCATCCTCTTCATTGCATTTGGAGGGGTTCTAATCTCTTTTGTAGCTTTTATTAGTATATATCTCTTCAAGAAAAAGGCAAAAAATTTATATACTACTTCTCTAGCTTTGCAATATGGCTATGTGAAGGTTTCTTATAGAGAGCTACATCAAGCAACAAATGGATTTTCTTCATCCAATTTAGTTGGCACAGGAAGCTTTGGCTCTGTGTATAGAGGAATCCTTGTCCATTTTGAGAGGCCTGTTGCTGTGAAGGTGTTGAATCTTCAAACACGGGGGGCATCAAAGAGTTTCATGGCCGAATGCAAAGCTTTAGGAAAAATCAAGCACAGAAACCTTGTCAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGTTGCACAACGCTATTGAAGATAGCGAATCCACAAATATGAGTCTCAACCTTATGCAGAGAGTAAATATTGCTCTTGACATAGCTTTTGCATTGGATTATCTTCACAATGGTTCTGGGGAAGCTGTGGTTCACTGCGATGTTAAGCCAAGCAATGTTCTACTTGATAATGAAGTTGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGGTGACGCATGCCGTTCTAGCAGTAATCACGCTAGCTCCTCTGCAATTAAGGGAACCATTGGATATATTCCGCCAGAGTATGGAGCAGGATCTCCAGTGTCAGTAGAAGGAGACATGTATAGTTATGGAATTCTTCTTTTGGAGATGATCACCGGAAAGAAGCCAACTGATAGCATGTTTGGTGAAGGTCTAAGCCTACACAATTTCTGTAACATGGCAACTCTAGATGGAATCACTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATCATCAAGAAGGAAGGGTTACACAACAGCAAAATATGGAAGACACCATTCAAGAATGTCTTGTGTCCTTTGCTAGTATTGGAGTTGCATGTTCTCAAGAGTTTCCTAATCAGCGAATGAGCATAAAAGATGTCATAACTGAATTGCTTGCAATCAAGCAAAAGCTATCATGCTAA 3063 0.397 MLILSPSHYNKIMVSLIMFLLSMASQTLAVNVALSTETDKIALLVLKDKLTNGDPHALSSWNESLHFCAWEGITCSRRHMRVSALQLQNQYWGGTIAPSLGNLTFLRVINLTNINLHGEIPREVGHLKRLQFLGLSNNNLHGEIPIEMINCSSLEVIIMWQNNLTGKVPSWLGSMMQLTHLGLAVNNFVGSIPPSLGNLSSLEALSLGVNHLEGRITPALGRLSNLKFLSLSSNNFSGQVTPSLYNLSNIQVLDFARNHLMGTLLSNIPLAFPNLKMFTCGGNRFIGTFPSSISNLSELQLFDISVNNFHGPISPTLGSLHKLQIFNVGHNRFGNGRDHDLDFLFSLTNCTQLQNLDFYENYLGGVLPDIIGNLSTNLVLLDMALNQISGRIPEGIGKLVNLATLDMEENFLGGTIPDSMGKLKNLGELWLSENKFYGNIPLVIGNLTMLSDVDLSSNEFEGLIPFTLGYCTNMQKFSASENNLSGNIPNQTFGNQQGLIQLLLYSNSFTGPIPSDLGNLNHLPILDLQDNKLIGEIPTRLSACTALTELVLERNSFHGSIPSFLGSLLSLEILDLSNNNFSSTIPHELVNLTFLSMLNVSFNHLYGEVPVGGVFNNVTAISLVGNKDLCGGIPQLNLPACPMLPSQKRSLKKRVILFIAFGGVLISFVAFISIYLFKKKAKNLYTTSLALQYGYVKVSYRELHQATNGFSSSNLVGTGSFGSVYRGILVHFERPVAVKVLNLQTRGASKSFMAECKALGKIKHRNLVSILTCCSSVDYKGNDFKAIVFEFMPNGSLETLLHNAIEDSESTNMSLNLMQRVNIALDIAFALDYLHNGSGEAVVHCDVKPSNVLLDNEVVAHLGDFGLARLIHGDACRSSSNHASSSAIKGTIGYIPPEYGAGSPVSVEGDMYSYGILLLEMITGKKPTDSMFGEGLSLHNFCNMATLDGITEIVDSRLLIPIDHQEGRVTQQQNMEDTIQECLVSFASIGVACSQEFPNQRMSIKDVITELLAIKQKLSC* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0311 1020 SUPERFAMILY L domain-like 36 333 - -
Amo17g0311 1020 ProSiteProfiles Leucine-rich repeat profile. 570 593 IPR001611 GO:0005515
Amo17g0311 1020 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 1020 - -
Amo17g0311 1020 SMART LRR_typ_2 399 423 IPR003591 -
Amo17g0311 1020 SMART LRR_typ_2 223 247 IPR003591 -
Amo17g0311 1020 SMART LRR_typ_2 127 151 IPR003591 -
Amo17g0311 1020 SMART LRR_typ_2 447 470 IPR003591 -
Amo17g0311 1020 SMART LRR_typ_2 520 544 IPR003591 -
Amo17g0311 1020 SMART LRR_typ_2 568 592 IPR003591 -
Amo17g0311 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Amo17g0311 1020 ProSiteProfiles Protein kinase domain profile. 710 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0311 1020 Gene3D Phosphorylase Kinase; domain 1 672 791 - -
Amo17g0311 1020 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Amo17g0311 1020 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Amo17g0311 1020 PANTHER LRR RECEPTOR-LIKE KINASE 39 1020 - -
Amo17g0311 1020 Gene3D Ribonuclease Inhibitor 339 648 IPR032675 -
Amo17g0311 1020 Gene3D Ribonuclease Inhibitor 159 269 IPR032675 -
Amo17g0311 1020 SUPERFAMILY Protein kinase-like (PK-like) 691 1011 IPR011009 -
Amo17g0311 1020 Gene3D Transferase(Phosphotransferase) domain 1 792 1019 - -
Amo17g0311 1020 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Amo17g0311 1020 SUPERFAMILY L domain-like 376 631 - -
Amo17g0311 1020 Pfam Protein kinase domain 712 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0311 1020 Gene3D Ribonuclease Inhibitor 38 152 IPR032675 -
Amo17g0311 1020 SMART serkin_6 710 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0311 1020 Gene3D Ribonuclease Inhibitor 270 338 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0311 Amo-Chr17 4989217 4992588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0311 33 1018 Receptor kinase-like Gene Family AT3G47570 44.177 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo17g0311 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0311 - - ahf:112766919 1982.61