Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0306 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAATAAGATTAATAGGCAACAGCAGAGAAAGAAGAAGAACAACTCGAGCATGGCACAAACGCTAGCGATGCCCGTAGCTCCCTCTCTCGCCCTAATCTCAAACCCTAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGAGTTGGCGGAGTGAAGATTACGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCTCAGTGCTATGCGATGCCGAAGTCGCACTCATCGTCTTCTCTACCACAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGGTTGGAAGTGTTCAAGTAG 384 0.4948 MGRGRVQLKRIENKINRQQQRKKKNNSSMAQTLAMPVAPSLALISNPRPLSRAVYFPVLNPPKVRGLSIECARVGGVKITNNKRIEFSLQYIHGISVLCDAEVALIVFSTTGKLFEYSSDPWLEVFK* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0306 127 ProSiteProfiles MADS-box domain profile. 78 121 IPR002100 GO:0003677|GO:0046983
Amo17g0306 127 PANTHER MADS-BOX TRANSCRIPTION FACTOR 18 79 125 - -
Amo17g0306 127 PANTHER MADS-BOX TRANSCRIPTION FACTOR 18 1 27 - -
Amo17g0306 127 PANTHER MADS BOX PROTEIN 79 125 - -
Amo17g0306 127 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 117 IPR002100 GO:0003677|GO:0046983
Amo17g0306 127 ProSiteProfiles MADS-box domain profile. 1 37 IPR002100 GO:0003677|GO:0046983
Amo17g0306 127 PANTHER MADS BOX PROTEIN 1 27 - -
Amo17g0306 127 SUPERFAMILY SRF-like 91 125 IPR036879 GO:0003677|GO:0046983
Amo17g0306 127 SMART madsneu2 1 120 IPR002100 GO:0003677|GO:0046983
Amo17g0306 127 Gene3D - 77 127 IPR036879 GO:0003677|GO:0046983
Amo17g0306 127 Coils Coil 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0306 Amo-Chr17 4939710 4940800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0306 72 124 MADS-box Gene Family AT1G26310 50.820 3.41e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo17g0306 SRF-TF 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0306 K02952 - aip:107620785 149.828