Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0304 TTTGCTCGTTCTTCTTCTCGCGAAGCTTCCCCTGGTTTCTTCGATCGTTCTTTTCCCCTCCTTTCTCACTCCTTCGTTTTCTATTTGATTTTTCGTTTTCTGAAATCAAAGTTTGAACTCATTTTAAAGATAATAGATGATTTAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGACTATGAATTTGAATCTAACGAACCTCTCTCGGTTGTTGATGACCAATTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAAGAACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGGATGTCGGTGCTTGGATCATTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAACCGTCATATATGGGTTCCTATCTATCTGAATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGAAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAACCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCATGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAAGTCTGCACCATGCATACAATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAACTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGTTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAAATTAGGGTGTTACAATAAACTGTTTGATGCTGCATCAGTGGTGCATTTAAATTCCAGTCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1551 0.4275 FARSSSREASPGFFDRSFPLLSHSFVFYLIFRFLKSKFELILKIIDDLTSDCQLNPGEVDYEFESNEPLSVVDDQFVPKVGMTFTTLEDAGKFYKNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGCRCLDHSKVVLDHSHPCCPNRHIWVPIYLNHHFWAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVEEQVSSSIFNKFVVTYDSVATEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTASLHHAYNNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEIKLGCYNKLFDAASVVHLNSSQYQGHVMNYQFRVPAAGDNSLGV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0304 516 SMART 26again6 308 335 IPR006564 GO:0008270
Amo17g0304 516 ProSiteProfiles Zinc finger SWIM-type profile. 297 333 IPR007527 GO:0008270
Amo17g0304 516 PANTHER OS03G0843700 PROTEIN 165 407 - -
Amo17g0304 516 MobiDBLite consensus disorder prediction 423 437 - -
Amo17g0304 516 MobiDBLite consensus disorder prediction 416 450 - -
Amo17g0304 516 Pfam SWIM zinc finger 299 330 IPR007527 GO:0008270
Amo17g0304 516 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 65 164 IPR031052 GO:0006355
Amo17g0304 516 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 165 407 IPR031052 GO:0006355
Amo17g0304 516 PANTHER OS03G0843700 PROTEIN 65 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0304 Amo-Chr17 4858976 4874965 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g0304 SWIM 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0304 - - adu:110280503 600.512