Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0288 ATGGAATTCACCTCTTTTTCATGGGAAATCAATTCCATTGAAGATCCAAGCATACCACAAGAGTTCTGTTTCGACGATTGCTTCTCCATCATCTTCAGTTTCACCAAAGAATTGATCCAAATTACTCAACCCACAAGTCCAACCTCTGACTCTGAGGTTGACTTTTCTTATACAACTCTGGCCAATGAAGCGTTCTTGGTTCCTTCCGATATCCTATGTAATTGTACTCCGTTCACAGATCTCAATGGAGAAAACGCCGCATTCTTACATGACGTCTTCTCTTCATTGCCTATATCCCGTCAGATATTGGACCAAATTTTACCTGCAATGGGCGAAACCGCAAGAACGATTCGAAGCCATGAAGGGTGTGACTCCACCATGCCGGAGATTGTTGTGAACCTTTATGTTACCACGCACATTGTTGTCGAAGATTCTGATTTCTATAATGATGATCTTCGTCAAAACGTTCCTGAACTGGCACAACTCGTGAATCTGTTGGAGAGACCCAGAATTGATAATCAAGAAGATGATGCTGAACAACAATGCGCCATTTGCTTGGAAGAGTTTGGCCATAGTATTCAAGATTCAAGTGCAGAAGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAAAGCTGCATATTCCGTTGGCTCCGGCGTTGTGCCGACCGGCAATCGCCCTATTCTTGCCCGTTATGCCGCTGTAGCATATTTCCAAACTCACAGATACATGACGAATAG 741 0.4345 MEFTSFSWEINSIEDPSIPQEFCFDDCFSIIFSFTKELIQITQPTSPTSDSEVDFSYTTLANEAFLVPSDILCNCTPFTDLNGENAAFLHDVFSSLPISRQILDQILPAMGETARTIRSHEGCDSTMPEIVVNLYVTTHIVVEDSDFYNDDLRQNVPELAQLVNLLERPRIDNQEDDAEQQCAICLEEFGHSIQDSSAEVVRTNCSHVFHESCIFRWLRRCADRQSPYSCPLCRCSIFPNSQIHDE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0288 246 SUPERFAMILY RING/U-box 173 240 - -
Amo17g0288 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 152 235 - -
Amo17g0288 246 ProSiteProfiles Zinc finger RING-type profile. 182 234 IPR001841 -
Amo17g0288 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 239 IPR013083 -
Amo17g0288 246 SMART ring_2 182 233 IPR001841 -
Amo17g0288 246 CDD RING-H2 182 234 - -
Amo17g0288 246 Pfam Ring finger domain 181 234 IPR001841 -
Amo17g0288 246 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 152 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0288 Amo-Chr17 4725474 4726214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0288 172 238 C3H Transcription Factor Family AT5G47610 44.928 2.90e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0288 - - adu:110273516 475.322