Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0287 ATGGAATTCACCTCTTTTTCATGGGCAATCAATTCCATTGAAGATCCAAGCATACCACAAGACTTGTGTTTCGACGATTGCTTCTCCATCATCTTCAGTTTCACCAAAGAATTGATCCAAATTACTCAACCCACAAGTCCAACCTCTGAGGTTGACTTTTCTTCTACAACTGTGGCCAATGAAGCGTTCTTGGTTCCTTCAGATATCCTGTGTAATTGTACTCCGTTCACAGACCTCAATGGAGAAAACACCGCATTCTTGCATGAAGTCTTCTCTTCATTGCCTATATCCCATCAGATATTGGACCAAATTTTACCAGCAATGGGCGAAACCGCAAGAACGATTCGAAGCCATGAAGGGTGTGACTCCACCATGCTGGAGATTGTTGTGAACCTTTATGTTACTACGCACATTGTTGTCGAAGATTCTGATTTCTATAACGATGATCTTCGTCAAAACGTTCCTGAACTGGCACAACTCGTGAATCTGTTGGAGAGAACCAGAATTGATAAGCAAGATGATGATGCTGAAGAACAATGCGCCATTTGCTTGGAAGAGTTTGATTATAGTATTGAAGATTCAAGTGTAGAAGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAACGCTGCATATTCCGTTGGCTCCGGCGTTGTGCCGACCGGCAATCGCCCTATTCTTGCCCGTTATGCCGCTGTAGCATATTTCCAAACTCACAGATACATGACGAATAG 735 0.4299 MEFTSFSWAINSIEDPSIPQDLCFDDCFSIIFSFTKELIQITQPTSPTSEVDFSSTTVANEAFLVPSDILCNCTPFTDLNGENTAFLHEVFSSLPISHQILDQILPAMGETARTIRSHEGCDSTMLEIVVNLYVTTHIVVEDSDFYNDDLRQNVPELAQLVNLLERTRIDKQDDDAEEQCAICLEEFDYSIEDSSVEVVRTNCSHVFHERCIFRWLRRCADRQSPYSCPLCRCSIFPNSQIHDE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0287 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 237 IPR013083 -
Amo17g0287 244 SMART ring_2 180 231 IPR001841 -
Amo17g0287 244 ProSiteProfiles Zinc finger RING-type profile. 180 232 IPR001841 -
Amo17g0287 244 SUPERFAMILY RING/U-box 171 238 - -
Amo17g0287 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 148 233 - -
Amo17g0287 244 Pfam Ring finger domain 179 232 IPR001841 -
Amo17g0287 244 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 148 233 - -
Amo17g0287 244 Coils Coil 147 167 - -
Amo17g0287 244 CDD RING-H2 180 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0287 Amo-Chr17 4716525 4717259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0287 170 236 C3H Transcription Factor Family AT5G47610 41.791 1.00e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0287 - - adu:110273516 451.44