LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g0280	ATGGTAGGAATGGACCAAAAAGATGCATATGTTGGAGATGAGGCACAATCTAAGAGAGGTATCTTGGCTCTCAAGTATCCAATTGAGCACGATATTGTAAGCAATTGGGATGCTATGGAGAAGATTTGGCATCACAAATTCTATAATGAGCTTCGAGTTGCCCCTGAAGAGCATCCAGTTTTGCTGACTAAGGCTCCTCTTAACCCGAAAGCTAATCGCGAGAAGATGACTCAAATCATGTTCGAGACCTTCAATGCCCCTGCCATCTATGTAGCCATTCAGGCTCAACCGGTATTGTGTCTGAGCCACACTGTCCCAATCTAG	324	0.4475	MVGMDQKDAYVGDEAQSKRGILALKYPIEHDIVSNWDAMEKIWHHKFYNELRVAPEEHPVLLTKAPLNPKANREKMTQIMFETFNAPAIYVAIQAQPVLCLSHTVPI*	108

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g0280	107	PANTHER	ACTIN, ALPHA SKELETAL MUSCLE	1	97	-	-
	Amo17g0280	107	ProSitePatterns	Actins signature 1.	10	20	IPR004001	-
	Amo17g0280	107	Pfam	Actin	7	95	IPR004000	-
	Amo17g0280	107	CDD	NBD_sugar-kinase_HSP70_actin	25	95	-	-
	Amo17g0280	107	SUPERFAMILY	Actin-like ATPase domain	2	97	IPR043129	-
	Amo17g0280	107	PRINTS	Actin signature	72	85	IPR004000	-
	Amo17g0280	107	PRINTS	Actin signature	6	17	IPR004000	-
	Amo17g0280	107	PRINTS	Actin signature	41	59	IPR004000	-
	Amo17g0280	107	Gene3D	-	1	106	-	-
	Amo17g0280	107	PANTHER	ACTIN	1	97	IPR004000	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g0280	Amo-Chr17	4448558	4448958	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g0280	1	107	Cytoskeleton Gene Families	AT3G12110	77.419	1.70e-61	190

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g0280	K10355		-	ming:122088917	184.882

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