Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0280 ATGGTAGGAATGGACCAAAAAGATGCATATGTTGGAGATGAGGCACAATCTAAGAGAGGTATCTTGGCTCTCAAGTATCCAATTGAGCACGATATTGTAAGCAATTGGGATGCTATGGAGAAGATTTGGCATCACAAATTCTATAATGAGCTTCGAGTTGCCCCTGAAGAGCATCCAGTTTTGCTGACTAAGGCTCCTCTTAACCCGAAAGCTAATCGCGAGAAGATGACTCAAATCATGTTCGAGACCTTCAATGCCCCTGCCATCTATGTAGCCATTCAGGCTCAACCGGTATTGTGTCTGAGCCACACTGTCCCAATCTAG 324 0.4475 MVGMDQKDAYVGDEAQSKRGILALKYPIEHDIVSNWDAMEKIWHHKFYNELRVAPEEHPVLLTKAPLNPKANREKMTQIMFETFNAPAIYVAIQAQPVLCLSHTVPI* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0280 107 PANTHER ACTIN, ALPHA SKELETAL MUSCLE 1 97 - -
Amo17g0280 107 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Amo17g0280 107 Pfam Actin 7 95 IPR004000 -
Amo17g0280 107 CDD NBD_sugar-kinase_HSP70_actin 25 95 - -
Amo17g0280 107 SUPERFAMILY Actin-like ATPase domain 2 97 IPR043129 -
Amo17g0280 107 PRINTS Actin signature 72 85 IPR004000 -
Amo17g0280 107 PRINTS Actin signature 6 17 IPR004000 -
Amo17g0280 107 PRINTS Actin signature 41 59 IPR004000 -
Amo17g0280 107 Gene3D - 1 106 - -
Amo17g0280 107 PANTHER ACTIN 1 97 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0280 Amo-Chr17 4448558 4448958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0280 1 107 Cytoskeleton Gene Families AT3G12110 77.419 1.70e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0280 K10355 - ming:122088917 184.882