Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0270 ATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGGACGAAGTCATGGAAGGTGAGTTTCAGAAGCAGAATCAGGATGGTGTCCATAACTTCTCAGCTTTGCTTGAGCTGTCTGCATCCGATGATTTCGAAGCTTTCAGAAGAGAAGTTGAAGAGAAGGGTTGTGATGTAAACGACGCAGGCTTTTGGTATGGGAGAAGAATCGGATCAAAGAAGATGGGTTTCGAGAAGAGGACCCCTCTCATGATTGCTTCACTGTTTGGAAGCACCAGGGTGCTGAAGTATATTATCGAGACAGGCATGGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCAACGGCTCTCCACTGTGCTGTTGCTGGGGGCTCTGAATCCTCCCTCGAGATCGTCAAGCTCTTGCTCGATGCCCATGCTGATGCCGATTGCGTTGATGCTAGTGGTAATAAGCCTGTTAATCTGATTGCTCCTGCCTTCAATTCTTTGTCAAGTTCAAGGAGGAAGGCCATAGAGTTGTTTCTAAGAGGTGGGGAAAGAGATCAGCTTTTCAACCAGGAGATGGAGCAACAGATGCTCTCTTCTCTCTCGTTGAAAGAAGGATTGGAGAAAAAGGAAGGAACTGATAAGAAAGAATATCCTGTTGATGTTTCGTTGCCGGACATAAACAATGGTGTCTATGGAACTGACGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCATGCTCAAGGGCTTATTCCCATGATTGGACTGAGTGCCCATTTGTTCATCCAGGGGAGAACGCAAGGAGGAGAGACCCACGCAAGTACCCTTACAGCTGTGTTCCCTGCCCAGAATTCCGCAAAGGGTCCTGCCAGAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTTCACCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAGACTGGCTGCAGCAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAGGAGTTGCGTCCTGTGTATGCTTCCACTGGCTCAGCTATGCCTTCGCCAAAATCTTACTCAGCTAGTGGACTTGACATGACGGCGATGAGTCCTCTTTCACTTAGTTCCTCGTCGTTGCCTATGCCAACCGTTTCAACACCACCCATGTCACCCTTGGCAGCTTCTTCATCTCCCAAGAGTGGAAGCTTGTGGGCAAACAAAATAAACCTTACTCCACCATCATTGCAGCTCCCTGGCAGTCGCTTGAAGACTGCTTTGAGTGCCAGGGATTTCGATATGGAGATGGAACTGCTTGGTCTAGACAGCCCTGCTCGTCAACAGCAGCAGCAGCAACAACTAATTGAGGAGATTGCAAGGATATCTTCTCCATCTTTCAGGAGCAGGATTGGTGATTTGAATCCTACTAACCTTGATGACCTATTAGCAGCTGCTGACCCTTCTCTCCTGTCTCAATTGCATGGAATCTCTGCTCAACCTTCAACTCCTACGCAATTGCAATCGTCGATGCGCCAAAACATGAACCATCTTCGGGCAAGTTATCCATCCAATGTCACTTCCTCACCGGTGAGGAAACCTTCTGCTTTTGGGTTTGATTCTTCAGCTGCTGTGGCAGCTGCAGTGATGAATTCAAGGTCTGCTGCCTTTGCAAAGCGAAGCCAAAGCTTCATTGATCGCAGTGCTGCAAACCACCACATTGGGCTGTCTTCGCCCTCCAACCCCAGCTGCAGGGTCTCCTCTGGCCTTTCAGATTGGAATTCCCCATCTGGGAAGCTTGATTGGGGTGTGAATGGAGATGAACTGAATAAGCTGAGGAAATCAGCTTCTTTTGGATTCAGAAACAATGGGGCAGCAACTGCCTCCCCTTTGGCACAGTCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCATTGGTTCCTTCTGAAAGTTCTGAGATATTTGGTGCTGAGAAGAAGCAGCAGTTTGATCTCAGTAAAGAAAGGCTTCCACCATGGGTGGAGCAGTTGTATATAGAGCAGGAGCAGATGGTAGCATAA 2025 0.483 MCSGSKSKLSPSDEVMEGEFQKQNQDGVHNFSALLELSASDDFEAFRREVEEKGCDVNDAGFWYGRRIGSKKMGFEKRTPLMIASLFGSTRVLKYIIETGMVDVNRACGSDRATALHCAVAGGSESSLEIVKLLLDAHADADCVDASGNKPVNLIAPAFNSLSSSRRKAIELFLRGGERDQLFNQEMEQQMLSSLSLKEGLEKKEGTDKKEYPVDVSLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLSLSSSSLPMPTVSTPPMSPLAASSSPKSGSLWANKINLTPPSLQLPGSRLKTALSARDFDMEMELLGLDSPARQQQQQQQLIEEIARISSPSFRSRIGDLNPTNLDDLLAAADPSLLSQLHGISAQPSTPTQLQSSMRQNMNHLRASYPSNVTSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRSAANHHIGLSSPSNPSCRVSSGLSDWNSPSGKLDWGVNGDELNKLRKSASFGFRNNGAATASPLAQSEHVEPDVSWVHSLVPSESSEIFGAEKKQQFDLSKERLPPWVEQLYIEQEQMVA* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0270 674 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Amo17g0270 674 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Amo17g0270 674 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g0270 674 Gene3D - 8 207 IPR036770 -
Amo17g0270 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 673 - -
Amo17g0270 674 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Amo17g0270 674 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Amo17g0270 674 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Amo17g0270 674 SUPERFAMILY Ankyrin repeat 28 153 IPR036770 -
Amo17g0270 674 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Amo17g0270 674 SMART ANK_2a 111 143 IPR002110 GO:0005515
Amo17g0270 674 SMART ANK_2a 76 106 IPR002110 GO:0005515
Amo17g0270 674 Gene3D - 272 333 - -
Amo17g0270 674 Pfam Ankyrin repeats (3 copies) 53 142 IPR002110 GO:0005515
Amo17g0270 674 PANTHER UNKEMPT FAMILY MEMBER 19 673 IPR045234 -
Amo17g0270 674 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0270 Amo-Chr17 4247562 4251025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0270 29 640 C2H2 Transcription Factor Family AT5G12850 41.768 5.13e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g0270 Ank_2 4.7e-08 CL0465