Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0250 ATGGAAAACTACTACTATTCTGGATGGCCTCAATCTCAATGCAACAACTCTGCACCAAACAGTAACAATAATTCTTCCTTTTCAGTACCAACACAGATAGTGCCTCATGCCTATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCCATGGCCTTTAGCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATTGTAATTTCAGTTTGCTGTGATGATAGACCAGAACTTTTCAGTGAACTCATTCAAGTCCTAAAAGGGTTGAGTCTCACAGCAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAGAGCATATTGGTGCTATGCTCTAAGGAAAATGAAGAAGGTGGTGATGGTGTTTGCCTTAACACTCTCAAACAATCACTGAAATCTGCTGTTAACAAAATTGCTTCATCATCCATGACATCAAATTGTCCCACAAGAAGTAAGAGGCAAAGGTTCTTCTTGCCTTCACATTTCATACAGTGA 771 0.4073 MENYYYSGWPQSQCNNSAPNSNNNSSFSVPTQIVPHAYDSAFASLQFQYPWPLAFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSETDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFSELIQVLKGLSLTAVKADIASVGGRIKSILVLCSKENEEGGDGVCLNTLKQSLKSAVNKIASSSMTSNCPTRSKRQRFFLPSHFIQ* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0250 256 PANTHER TRANSCRIPTION FACTOR BHLH51 24 254 - -
Amo17g0250 256 PANTHER TRANSCRIPTION FACTOR BHLH30 24 254 IPR045847 GO:0003700|GO:0006355
Amo17g0250 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 118 IPR036638 GO:0046983
Amo17g0250 256 SMART finulus 71 120 IPR011598 GO:0046983
Amo17g0250 256 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
Amo17g0250 256 CDD ACT_UUR-ACR-like 158 195 - -
Amo17g0250 256 CDD bHLH_AtAIG1_like 60 137 - -
Amo17g0250 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Amo17g0250 256 Gene3D - 60 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0250 Amo-Chr17 3873682 3875678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0250 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.449 2.92e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g0250 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0250 - - gmx:100799687 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0250 17 3873682 3875678 Amo17g0250 17 3873682 3875678 ECH
Amo10g0916 10 15117945 15119658 Amo17g0250 17 3873682 3875678 PCT
Amo17g0250 17 3873682 3875678 Amo10g0916 10 15117945 15119658 PCT