Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0248 ATGGCGTTATTTGAGTCAGTTGCGATGATGATCGAAGACAACAACAAATTTGACGAAGAAGCAGATCGAATCAAGGGGTCATGGACTCCCCAAGAGGATGCAACGCTTCTGAAGCTGGTGGCGCAGCACGGAGCACGGAACTGGTCCGTCATAAGCAACGGGATACCGGGCCGATCGGGAAAGTCATGCCGACTGCGGTGGTGCAACCAGCTCAGCCCCGACGTTCAGCACCGACCGTTCACCCCTGCGGAGGACGAAATCATCCTTAAGGCTCACGCCGTACACGGCAACAAGTGGGCCACCATCTCCAGACTCCTTCCTGGCCGCACCGACAACGCTATCAAGAACCACTGGAACTCCACCCTCCGCCGCCGTAAAGGTGTCACCGTCGCCTTTCCCGGCGCCGGATTCCCCTCCGCGGCAGCAACCGACGCCTCCGCCAGCGGAGGATTATCCGGATTCTCTTCTGCCGCCACGTCGTCGTCATCAGATTTCAGTCCAACATTTGTTTGCCAAAAGCGCAAGGGCGAGCAGTTAGAGTTGCCACAGAATGTCAACAAGAAGCCGTGTTTGGCGGCAGTTGCCGTCAACAGTCACGCGGAGGAGGAGGTTCGCCAAAAGCGCAACGCTGAAGAAGAAGAAGAAGGCGGCGTGACGACACTGAGTTTGCTCCCGCCCGGAGAGAAGCCTTTGGGCGCAGAGGGAGTGTGGCGGAAGGAGGAGGAAGTCAATCGGTACGGCGAGCATGCATGGTTGATGAAGATGATGCGGCCCATGATAGCAGAAGAGGTTAGGAGATACATTCAAAGCTTACAAAAGACTCAACCACTCTTTGAGCCTGATCCACCTAGTAAAAATTTTTAA 864 0.5567 MALFESVAMMIEDNNKFDEEADRIKGSWTPQEDATLLKLVAQHGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDEIILKAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRKGVTVAFPGAGFPSAAATDASASGGLSGFSSAATSSSSDFSPTFVCQKRKGEQLELPQNVNKKPCLAAVAVNSHAEEEVRQKRNAEEEEEGGVTTLSLLPPGEKPLGAEGVWRKEEEVNRYGEHAWLMKMMRPMIAEEVRRYIQSLQKTQPLFEPDPPSKNF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0248 287 PANTHER MYB PROTEIN-RELATED 12 253 - -
Amo17g0248 287 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Amo17g0248 287 SMART sant 24 73 IPR001005 -
Amo17g0248 287 SMART sant 76 124 IPR001005 -
Amo17g0248 287 MobiDBLite consensus disorder prediction 201 234 - -
Amo17g0248 287 CDD SANT 27 69 IPR001005 -
Amo17g0248 287 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 12 253 - -
Amo17g0248 287 ProSiteProfiles Myb-like domain profile. 20 71 IPR001005 -
Amo17g0248 287 MobiDBLite consensus disorder prediction 145 167 - -
Amo17g0248 287 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Amo17g0248 287 Gene3D - 24 76 - -
Amo17g0248 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 71 IPR017930 -
Amo17g0248 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Amo17g0248 287 CDD SANT 79 122 IPR001005 -
Amo17g0248 287 Pfam Myb-like DNA-binding domain 79 121 IPR001005 -
Amo17g0248 287 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Amo17g0248 287 Gene3D - 79 125 - -
Amo17g0248 287 MobiDBLite consensus disorder prediction 201 215 - -
Amo17g0248 287 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0248 Amo-Chr17 3865339 3866462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0248 22 166 MYB Transcription Factor Family AT4G37260 57.325 2.54e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g0248 Myb_DNA-binding 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0248 - - ahf:112702359 512.301