Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0231 ATGGGTGGGAATTCACCGTGTGCCTCATGCAAGCTTCTGAGACGCAGGTGCACCAAAGATTGTGCATTTGCTCCTTATTTCCCTGCTGATGAACCCCACAAGTTTGCCATAGTCCACAAAGTTTTTGGCGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCGGTGGAGCAAAGAGCAGATGCAGTGAGCAGCCTAGTGTACGAGGCGAATGCGAGGGTCCGGGATCCGGTGTACGGGTGTGTCGGAGCCATATCATACCTTCAAAACCAAGTCTCAGAGCTTCAAATGCAGCTAGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCAGCAAGTAGAAGAAGATCCACCAGTGATGATGATGATGATGCCACCACCTCAACTCTCAAATGAAAATGAACTCTCTCATCATCACTACTTTACTACTTTTGGATCTTCTTCTACCAACAATGTAATTCATGATTCCTTCAAGAGACAAAGTGTTTTTGGACATGACATGGTTTCTTGA 516 0.4632 MGGNSPCASCKLLRRRCTKDCAFAPYFPADEPHKFAIVHKVFGASNVSKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQQVEEDPPVMMMMMPPPQLSNENELSHHHYFTTFGSSSTNNVIHDSFKRQSVFGHDMVS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0231 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 128 - -
Amo17g0231 171 Coils Coil 85 105 - -
Amo17g0231 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Amo17g0231 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Amo17g0231 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0231 Amo-Chr17 3291484 3292573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0231 3 114 AS2 family AT2G30130 90.179 3.46e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo17g0231 LOB 8.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0231 - - cit:102614863 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0231 17 3291484 3292573 Amo17g0231 17 3291484 3292573 ECH
Amo20g1405 20 30879344 30880186 Amo17g0231 17 3291484 3292573 PCT
Amo17g0231 17 3291484 3292573 Amo20g1405 20 30879344 30880186 PCT