Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0221 ATGGTAGGAAAAAGGAAGTATTTGCATCAATCCAAGCATCCATTCAATGCTTACCCCTTTGAAGCATGTGTGTATGGTTCATGGAAAGCGGTGGAGTTCATAAAAATTGAGTATGGAGTTATGTCCATACATTTCATTGATAAACGCCATATTTCTATGGAAAAAGGCCCCTCTGCAGACGTTCGGATAAGGTCGAGAATAGCTACTACTGCAGATTGCTCCTGCATTTTACGACGGGGAATTGACGTATGTGTGCTATCATCTCCTCAAGGAACTGGTGATTCGGATGAATTTGATGCTCGCGAGCCTGTTTGGAGAGATGCTAGAATTAGTTCTATACAGAGAAAGCCCCATGATTCTGAGTGCACATGCCAATTTTATGTCAACTACTATGTTAATCAAGGTTCGCTTGGTGCAGAGATGAAAACGCTTAACAAGGATATTAATGTGGTTGGATTAGATCATATCTTCATCCTCCAAAGGCTTGAACATACACATTGTGATGAAGATCAGCACTATCGGTGGACTTCAACAGAGGACTGCTCTAGAATACCACAAACTAGATTGCTGTTGGGGAAATTTTTACCTGATATTTCGTGGTTGATCGCGACATCTGTTTTAAAGAAGGTTTCTTTCTTTATAAGATCTGTGGAAAACAAGCTTGTTTATGAAGTTCTGTCAAATGACATTGTTATCCCCCCGTTCCATACCGAGTCTCATATAAATGTTGTAAACTTCAAACTGGAGAAAGACATGCTAATACCTATTGTTTCTCAAGTTATTGTATCCAGAACTGAGAGGGTTGACTATGAACATCAAGAATCCCATGAAGATGAAGTGTCACCATCATCATATAATGTTCAAGGCTTACGGCGTTCCAAGCGTCGACATGTACAACCTGACCGTTACCTTGGTTGCAATAGTGCTCCTGAGCTCAATATTGGTACTATTAGAACAAGGCCATACAAATTAGGCACATGGGAACAAGTTGATGAAGATCATGAACTGTCAATGCCATTATCTTCCCTGTTTGGATTGAAACAAATCAGTCAAGATCAGGATCTTGATAGTAGTCCTAAGGAGAGCAAGGTGAATGGTTGCCAGGAGATTATAGTTTACAATAGGAGGGCTAAAGCCAAGGAGGCGAAGCCAGGCGATGCTGATCGAGACATACAGCTCAATGAACTCGCTATTATTCCTCATCCTACTCTTAAACATCATAAGCTCAATGACATGACTTGTAGAATTGGCAAACATGAACCAGACGAAACTCCTTCGAAATATAGTCATCTGGTTAATAGCACTAAGCAGAAAAGGAATAGTGTCAATCTGTTGAATTTCAATCCAGATAATGTGCTTGCGCAGTTAGAGGAGGTGGAGAAAAGTGATGGTTTTTCTTCAAGATGTCATTATACTTATAGTTACAGCACCTCCAAGTTTCAGAGGAAGGCTTTAAGAGATCTTGATGATATGAATCTGGCACCAAAATGGGAAGGCATACATTCCAGTAAGGGAGCTCAAGATAGAAGGTACCGTCCGGCATTTTCGAGAAATAGACATCCTGATGAAGAAAGAACTTATAAAGACAGAACATTGAATGCCACAGCCTACAAGGAGTTGATAAATTCCTACTTAAAGAATATTAACACGAAACCAACGAAAGAAGAAATGCCTATTAGTGACCAGTGGAAGCAGTTCCAGGATTCACGCAGTGTCGGGAAAACGAAGGAAATAAAAATATCCAATACCGATTATGCAGAAGATACCTCTGAGTTGGATAGTTTGTGGAGAGAAATGGAAGTGTCTCTGGCATCAAGTTACATTGAAGACACAGAGGATGCGAATGCAGCCAATCTTTTCGACACTCAGGAAATATCAAAGGAAGCTTGTGAACATTACTTTAGATTGGATGATGAAATTGGAATTTGCTGCTTGAAATGTGGCTTTGTGGAGATGGACATTAAAGCTATCACACCAGCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAGGCAGAACGTCGGCAAAGAAGATGCAGAATCGAAGGCTGCTGAATTTGAAGATTTCAATCTTGTCTCAAATGTTGAGAATGAAGATGAACCTGTATTGGTGGAACATGATAATGTATGGGCATTAATTCCGGATCTTCGAAAGAAGTTGCACATCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGAGAAACATTGCCGGGTCTACAGAACCAGCACTTATGGACAAGAACTCCAGAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTCCTGATTATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCGGGAAAGAAACCTCTAGTCCTTGCACCAAAAACAACACTTTATACCTGGTATAAAGAATTTATCAAGTGGGAGATTCCAATACCGGTGTATCTAATTCATGGTCGAAGAACCTACAGGGTATTCAACCAGAAACAATCAATGGTTTTTCCCGGAATGCCAAAGCCCACGGAGGATGTCAAGCATGTTTTAGATTGCCTAGAGAAAATACAGAAGTGGCATTCACACCCGAGTGTTCTAATCATGGGATATACTTCATTTTTGACATTGATGCGAGAGGATTCAAAGTATGCACATAGAAAGTATATGGCTAAAGTTCTGAGGGAAAGTCCCGGACTCCTAGTATTGGATGAAGGGCACAATCCGAGAAGCACCAAGTCCAGGTTGAGGAAAGTTTTGATGAAGGTACAAACAGAATTGAGAATACTGCTGTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTCTTGTTGGCAAGACCAAAGTTTGCACATGAGGTGCTGAAAGTTTTAGACCCGAAATACAAGAAGAAGAAAGGAAAAGTGAGGGCAGTGGAGTACCGGGCAAGGAAATTCTTCATAGAAGTGATCTCTAGGAAAATCGACTCGAACAATGGCGAGGAGAGGATGCAAGGTCTTAACATGTTGAGAAATTTAACAAATGGTTTTATAGATGTTTATGAAGGTAGTAGCTCGGACGACCTACCCGGTTTGCAAATTTATACTTTGTTGATGAACACAACCGATACGCAGCATGAGATGTTGAAGAGACTGCACAAGAAAATGCAAAAGTGCAATGGATATCCTCTGGAGTTAGAGCTTTTGATAACTCTTGGGTCCATACATCCTTGGTTGATCAAAACTGCTGTATGTGCTAACAAGTTTTTCACAATGGAGGAACTGAGGGAGCTAGAGAAATGCAAGTTTGATTTGAAGATGGGGTCTAAGGTAAAATTTGTTATGAGCCTTATCTACCGCGTGGTCCAGAAGGAGAAGATCCTCATCTTCTGCCACAACATTGCACCAGTGAAGTTATTTATAGAATATTTTGAGTTGTTCTTCAAATGGCAAAAAGGGCGGGAAATTCTGGTGTTAACCGGGGAGCTAGAGCTCTTCGAGCGCGGCAGAGTGATGGATAAGTTTGAGGAACCTGGTGGAGTTTCAAAGATACTCCTTGCTTCGATTACAGCTTGTGCCGAAGGCATTAGTTTGACGGCAGCTTCTCGGGTGATCATGCTGGATTCCGAGTGGAATCCGTCGAAAACAAAGCAGGCCATCGCAAGGGCTTTTCGTCCCGGCCAGCAGAAAATGGTTTATGTGTATCAGCTCCTGGTAACCGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACATGGAAAGAGTGGGTGTCAAGCATGATTTTCAGTGAGGAGTTTGTGGAGGATCCTTCCCAATGGCAAGCTCAGAAGATTGAAGATGAAATCCTGAGGGAAATGGTTGAGGAGGACAAGTCCAAGTCATTCCATATGATTATGAAGAATGAAAAGGCTTCAACAAACAACAGATAA 3900 0.4131 MVGKRKYLHQSKHPFNAYPFEACVYGSWKAVEFIKIEYGVMSIHFIDKRHISMEKGPSADVRIRSRIATTADCSCILRRGIDVCVLSSPQGTGDSDEFDAREPVWRDARISSIQRKPHDSECTCQFYVNYYVNQGSLGAEMKTLNKDINVVGLDHIFILQRLEHTHCDEDQHYRWTSTEDCSRIPQTRLLLGKFLPDISWLIATSVLKKVSFFIRSVENKLVYEVLSNDIVIPPFHTESHINVVNFKLEKDMLIPIVSQVIVSRTERVDYEHQESHEDEVSPSSYNVQGLRRSKRRHVQPDRYLGCNSAPELNIGTIRTRPYKLGTWEQVDEDHELSMPLSSLFGLKQISQDQDLDSSPKESKVNGCQEIIVYNRRAKAKEAKPGDADRDIQLNELAIIPHPTLKHHKLNDMTCRIGKHEPDETPSKYSHLVNSTKQKRNSVNLLNFNPDNVLAQLEEVEKSDGFSSRCHYTYSYSTSKFQRKALRDLDDMNLAPKWEGIHSSKGAQDRRYRPAFSRNRHPDEERTYKDRTLNATAYKELINSYLKNINTKPTKEEMPISDQWKQFQDSRSVGKTKEIKISNTDYAEDTSELDSLWREMEVSLASSYIEDTEDANAANLFDTQEISKEACEHYFRLDDEIGICCLKCGFVEMDIKAITPAFIQHSVWHQEERQNVGKEDAESKAAEFEDFNLVSNVENEDEPVLVEHDNVWALIPDLRKKLHIHQKKAFEFLWRNIAGSTEPALMDKNSRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKQSMVFPGMPKPTEDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLLLARPKFAHEVLKVLDPKYKKKKGKVRAVEYRARKFFIEVISRKIDSNNGEERMQGLNMLRNLTNGFIDVYEGSSSDDLPGLQIYTLLMNTTDTQHEMLKRLHKKMQKCNGYPLELELLITLGSIHPWLIKTAVCANKFFTMEELRELEKCKFDLKMGSKVKFVMSLIYRVVQKEKILIFCHNIAPVKLFIEYFELFFKWQKGREILVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAQKIEDEILREMVEEDKSKSFHMIMKNEKASTNNR* 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0221 1299 Gene3D - 1020 1299 IPR027417 -
Amo17g0221 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1296 - -
Amo17g0221 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1264 IPR001650 -
Amo17g0221 1299 CDD SF2_C_SNF 1092 1228 - -
Amo17g0221 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1280 IPR027417 -
Amo17g0221 1299 SMART helicmild6 1132 1217 IPR001650 -
Amo17g0221 1299 MobiDBLite consensus disorder prediction 271 292 - -
Amo17g0221 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1296 IPR044567 GO:0080188
Amo17g0221 1299 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Amo17g0221 1299 CDD DEXHc_ATRX-like 721 947 - -
Amo17g0221 1299 Gene3D - 690 976 IPR038718 -
Amo17g0221 1299 Pfam SNF2-related domain 724 952 IPR000330 GO:0005524|GO:0140658
Amo17g0221 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 746 946 IPR014001 -
Amo17g0221 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 688 948 IPR027417 -
Amo17g0221 1299 SMART ultradead3 717 955 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0221 Amo-Chr17 3186723 3193146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0221 1096 1235 RAD5 or RAD16-like Gene Family AT5G43530 32.168 1.63e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo17g0221 SNF2_N 2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0221 K10875 - gmx:100811703 1748.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0221 17 3186723 3193146 Amo17g0221 17 3186723 3193146 ECH
Amo20g1344 20 28765158 28770740 Amo17g0221 17 3186723 3193146 PCT
Amo10g1000 10 18565361 18570633 Amo17g0221 17 3186723 3193146 PCT
Amo17g0221 17 3186723 3193146 Amo20g1344 20 28765158 28770740 PCT
Amo17g0221 17 3186723 3193146 Amo10g1000 10 18565361 18570633 PCT