Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0219 ATGGGGACTTATGATCAAGGTTCTAATAATATCAGTCTAGTACCCTTGGACTCTTCTAGAAAGAGGAAGAGTAGGAGTAGAAGAGACGGGTCTAGATCTGTGGCTGAGACACTGCAAAAGTGGAAGAAATACAATGAGAATCTTCAGTCTGGTAAAGAGGAAGGTAAGCCTACTCGAAAGGCTCCGGCGAAGGGTTCGAAGAAAGGGTGCATGAAAGGGAAAGGAGGGCCCCAAAATTCACAGTGTAACTATAGGGGTGTTAGGCAGAGGACATGGGGAAAATGGGTTGGCGAGATTCGGGAGCCAAACAGAGGGAGTAGGCTTTGGTTGGGTACTTTCTCCACTGCCGAAGAAGCTGCCTTAGCTTATGATGAAGCTGCTAGGGCCATGTATGGTTCGAGTGCAAGGCTAAACTTTCCACACATAACGGATTATAGTTCTATCAAGGGATCGATGAAGGATTCTTCAACGGCTACAACTACTTCCTGTTCTAGTTCTTCGGCTGCAACTCCTGCTGCTTCCGACACGACTACTGTATCAAATCATTCGGAGGTTTGTGCCTTTGAGGATGTAAAGGAGCAAGTGCAAGTTGGCAAGGTGAATGGTACTGTTGTTGCCTGTCATAAGGCTTATGATTCTGTTGCTTCCCCTACTAGCAAGGTGAAGCAAGAGCTACTGGAGGAGCCTGAAGTTCTCACGGATCCTGGGGGAGTTGAAATCCAGAATGTACCTCGTGATGAGGGACAAGTTGCCATGGGTGATGTAAATAAAGATCAGATGGACTTGTCCTGGATTGATAATTTTGACTTTGAAGGTGGTGATTACTTGAAGAACTTCTCCGTGGATGAGCTATTTCAGGTGGACGAGCTTTTGGGGGATATAGACAAAAATCCAATTGAGGACTCTTCATTGATGCAAGCCTTGGATTTTGGTCAAATGGATAAAGGTCTGGATTTTAGTCAAATGAATTTCCCTGATGACAGCAGTCATCAGGCTGACATCCCTTCCAGCTATTTGTATCAATTGGAGAATCCGGATGCCAAGTTGTTAGGAAGTTTGCCCCATATGGAACAAATTCCATCAGATGCTGATTATGGATTGGATTTCCTAAAAGCCGAAGAACCGGAGAACTGCAACAATGGCGGGGAGCAAGAACATCGTTTTATCGATTTGAAATGCCTGAACAATGATCCAAAAGGGAATAATGCAAACGTTGAAGGATGA 1224 0.4493 MGTYDQGSNNISLVPLDSSRKRKSRSRRDGSRSVAETLQKWKKYNENLQSGKEEGKPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAEEAALAYDEAARAMYGSSARLNFPHITDYSSIKGSMKDSSTATTTSCSSSSAATPAASDTTTVSNHSEVCAFEDVKEQVQVGKVNGTVVACHKAYDSVASPTSKVKQELLEEPEVLTDPGGVEIQNVPRDEGQVAMGDVNKDQMDLSWIDNFDFEGGDYLKNFSVDELFQVDELLGDIDKNPIEDSSLMQALDFGQMDKGLDFSQMNFPDDSSHQADIPSSYLYQLENPDAKLLGSLPHMEQIPSDADYGLDFLKAEEPENCNNGGEQEHRFIDLKCLNNDPKGNNANVEG* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0219 407 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 MobiDBLite consensus disorder prediction 46 61 - -
Amo17g0219 407 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 377 - -
Amo17g0219 407 MobiDBLite consensus disorder prediction 18 36 - -
Amo17g0219 407 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Amo17g0219 407 MobiDBLite consensus disorder prediction 150 178 - -
Amo17g0219 407 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 MobiDBLite consensus disorder prediction 1 85 - -
Amo17g0219 407 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Amo17g0219 407 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 377 - -
Amo17g0219 407 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Amo17g0219 407 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0219 Amo-Chr17 3144669 3147080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0219 8 401 AP2-EREBP Transcription Factor Family AT2G40340 38.861 2.94e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo17g0219 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0219 - K09286 gmx:100800134 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0219 17 3144669 3147080 Amo17g0219 17 3144669 3147080 ECH