Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0215 AGTCTTGCAAGACTTTCTCTTTCCTGCTACTTACTCTCACTACAAAACCCTTCCTCATTCAACTGTTGTTCTCCTGTTTCATTTCCATGTTTCTTCTTAGGAATAGGATTAGCACCACACACTCCCCATTCTCCTCTCCTACATTCTCAACCACAGTGTCTTATGGACACTACTAGAGAGAACAACAACAACAATCAAGTTATTTATCAACTTGGGATGAGAAATGTAGCACATTGGCACCATCTAAAGTGGTTGTTATTCCTGATTCTGCTGCTGCCATTGAAGCCAGTTTTGTGTGATGACCATTGGGATGGAGTGGTTGTCACACAATCAAACTTCTTAGCCCTTCAAGCATTCAAGCAAGAACTCATTGACCCAAAAGGCTTCTTGAAAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCAGGTGGTTGGGCTGGAATCAAGTGTGCTCAAGGACAAGTCATTGTGATCCAGCTTCCATGGAAGGGTTTGAAGGGACACATCACTCAGAAAATTTCCCAACTTCAAGGCCTCAGAAAACTAAGTCTTCATGACAACCAAATTGGTGGTTCAATCCCTTCATCATTGGGGCTTCTTCCCAATCTAAGAGGTGTTCAACTCTTCAACAACAAGCTAACTGGTTCTGTTCCTCCTTCATTAGGTTCTTGTCCTTTGCTTCAATCTTTAGACCTCAGCAACAATTTACTCACTGGTCAAATCCCTTATACTCTTGGCAATTTAACCAAGCTTTATTGGCTCAACTTGAGCTTCAATTCCTTCAATGGTTCAATACCATCTAGCTTAACTAGTTTACCTTCTTTGACTTTCCTTTCTCTTCAACATAATAATCTCTCAGGTTCAATTCCTAACTCATGGGGTGGTAAAAATGGTTTCTTTAAGCTCCAGAATTTGATCTTAGATCACAACTTCTTGAGTGGAACCATTCCTTCTTTGGGAAGCCTAGTTGAACTCAGAGAGGTTTCTCTTGGTAATAACAATTTTAGTGGAGAAATACCATTTGAAATTGGAAAACTTTCTAGGCTCAAGACATTAGATTTTTCTAACAATGCATTCAATGGAAGCTTGCCTGCTACTATATCAAATTTATCCTCACTCACTCTGTTGAATGTAGAGAACAACCACTTTACTAGTCAAATCCCAGAAGCTTTAGGAAGATTACACAATCTTTCTGTTCTGGTGTTGAGTAGAAACCAATTTGTTGGCCACATTCCTCATAGTATTGGAAACATTTCAACACTTATGCGACTTGATTTGTCGCTGAATAACATCAGTGGCGAAATTCCAGATTCCTTTGCGAATCTAGCTAGTCTTAATTCCTTCAATGTTTCTTACAACAATCTATCTGGTCCTGTTCCCACATTACTTGCCAACAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAATTATGTGGCTATAGCCCTTCAAATCCATGTCCTTCACAAGCTCCTTCACAAGGAGTCATAGTCCCAACTCCTGAATCATCTAAACAACATCATCATAAGAAACTAGGCATCAAAGACATAATTCTTATAGTGGCAGGGGTGCTCCTTGTAGTCCTGGTAACAATTTGCTGCATCCTGCTAGTCTGCCTTATCAGAAAAAGATCAACATCGGATGCGGAACAAGACCGGGCTGCAACGAGAGCTACCACAACAAGGACAGGGAAGGGAATCTCTCCTCCAGCTGGAGCCGGTGATGTCGAAACTGGTGGTGAGAATGGAGGGAAACTAGTCCATTTCGATGGACCATTGGCTTTTACGGCCGATGACCTCTTGTGTGCAACAGCAGAGATAATGGGAAAAAGCACCTATGGAACTGTCTACAAGGCTACATTGGAGGATGGAAGCCAAGCTGCAGTTAAGAGATTGAGGGAAAAGATCACAAAAAGTCAGAGAGAATTTGAGTCTGAAGTTGCTGTGTTAGGGAGAATTAGACATCCAAATCTTTTGGCCCTAAGAGCTTATTACATGGGACCCAAAGGAGAAAAGCTTCTTGTGTTTGATTACATGCCTAATGGAAGTCTTGCTTCCTTCTTACATGCCAGAGGACCAGAAACAGTGATTGATTGGCCAACAAGGATGAGAATAGCGCAGGGCATGGCACGCGGCTTGTTCCACCTTCACTCTCGTGAGAACATCATACATGGGAACCTCACCTCCAGCAATGTGTTGCTTGATGAGAGCACAAATGCCAAGATAGCTGACTATGGTCTTTCCAGGTTGATGACAGCTGCGGCTAACTCCAATGTGATTGCAACGGCCGGAGCATTGGGGTACCGGGCGCCGGAGCTTTCAAAGCTGAAGAAAGCCAACACGAAAACCGATGTATACAGCCTTGGCGTTATCTTGTTAGAACTCCTAACGGGTAAGCCACCGGGTGAGGCTATGAATGGTGTGGATTTGCCACAATGGGTTGCCTCTATTGTGAAGGAGGAGTGGACTAATGAGGTGTTTGATGTTGAGTTGATGAGGGATGCATCAACAAATGGGGATGAGTTGCTCAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTACTCCGTCGGCGCGGCCAGAAGCACAGCAAGTGCTCCAGCAGCTGGAAGAGATTAGGCAAGAGGTAGTATCAGCCAGTTCTGGTGATGATGGAGGCATCCCTTCAACTAGCGAATGA 2682 0.4329 SLARLSLSCYLLSLQNPSSFNCCSPVSFPCFFLGIGLAPHTPHSPLLHSQPQCLMDTTRENNNNNQVIYQLGMRNVAHWHHLKWLLFLILLLPLKPVLCDDHWDGVVVTQSNFLALQAFKQELIDPKGFLKSWNDSGYGACSGGWAGIKCAQGQVIVIQLPWKGLKGHITQKISQLQGLRKLSLHDNQIGGSIPSSLGLLPNLRGVQLFNNKLTGSVPPSLGSCPLLQSLDLSNNLLTGQIPYTLGNLTKLYWLNLSFNSFNGSIPSSLTSLPSLTFLSLQHNNLSGSIPNSWGGKNGFFKLQNLILDHNFLSGTIPSLGSLVELREVSLGNNNFSGEIPFEIGKLSRLKTLDFSNNAFNGSLPATISNLSSLTLLNVENNHFTSQIPEALGRLHNLSVLVLSRNQFVGHIPHSIGNISTLMRLDLSLNNISGEIPDSFANLASLNSFNVSYNNLSGPVPTLLANKFNSSSFVGNIQLCGYSPSNPCPSQAPSQGVIVPTPESSKQHHHKKLGIKDIILIVAGVLLVVLVTICCILLVCLIRKRSTSDAEQDRAATRATTTRTGKGISPPAGAGDVETGGENGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKSQREFESEVAVLGRIRHPNLLALRAYYMGPKGEKLLVFDYMPNGSLASFLHARGPETVIDWPTRMRIAQGMARGLFHLHSRENIIHGNLTSSNVLLDESTNAKIADYGLSRLMTAAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTNGDELLNTLKLALHCVDPTPSARPEAQQVLQQLEEIRQEVVSASSGDDGGIPSTSE* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0215 893 Gene3D Ribonuclease Inhibitor 266 363 IPR032675 -
Amo17g0215 893 Gene3D Ribonuclease Inhibitor 110 265 IPR032675 -
Amo17g0215 893 Gene3D Ribonuclease Inhibitor 364 488 IPR032675 -
Amo17g0215 893 Gene3D Transferase(Phosphotransferase) domain 1 680 885 - -
Amo17g0215 893 SMART LRR_typ_2 272 295 IPR003591 -
Amo17g0215 893 SMART LRR_typ_2 176 199 IPR003591 -
Amo17g0215 893 SMART LRR_typ_2 346 369 IPR003591 -
Amo17g0215 893 SMART LRR_typ_2 200 224 IPR003591 -
Amo17g0215 893 SMART LRR_typ_2 442 465 IPR003591 -
Amo17g0215 893 SMART LRR_typ_2 370 394 IPR003591 -
Amo17g0215 893 ProSiteProfiles Protein kinase domain profile. 602 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0215 893 MobiDBLite consensus disorder prediction 550 575 - -
Amo17g0215 893 SUPERFAMILY Protein kinase-like (PK-like) 606 875 IPR011009 -
Amo17g0215 893 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672|GO:0006468
Amo17g0215 893 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Amo17g0215 893 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Amo17g0215 893 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 65 886 - -
Amo17g0215 893 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 65 886 - -
Amo17g0215 893 MobiDBLite consensus disorder prediction 552 566 - -
Amo17g0215 893 Pfam Leucine rich repeat N-terminal domain 114 150 IPR013210 -
Amo17g0215 893 SUPERFAMILY L domain-like 149 483 - -
Amo17g0215 893 CDD STKc_IRAK 608 873 - -
Amo17g0215 893 Gene3D Phosphorylase Kinase; domain 1 608 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0215 Amo-Chr17 3078885 3081748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0215 103 874 Receptor kinase-like Gene Family AT3G51740 64.820 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo17g0215 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0215 - - gmx:100811174 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0215 17 3078885 3081748 Amo17g0215 17 3078885 3081748 ECH
Amo10g0903 10 14706730 14709435 Amo17g0215 17 3078885 3081748 PCT
Amo17g0215 17 3078885 3081748 Amo10g0903 10 14706730 14709435 PCT