Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0189 ATGTCCAGAGAAAGGGAGAGATCAGATGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGAAGGTCAAAAAGGAAGGAGACAACACATGTTAGATAGTCAACAAGAAGGTGCTTCTGGAGGAACCCTAAATACAATCACCCCTTGTGCTGCATGTAAGCTCTTGAGAAGAAGATGTGCTCAAGAATGTTCCTTTTCTCCTTATTTCTCTCCTCATGAGCCCCAAAAGTTTGCTTCTGTTCACAAAGTCTTTGGTGCCAGCAATGTCTCAAAGTTGTTAATGGAAGTGCCTGAGAATCAAAGGGCTGATGCTGCAAATAGTCTAGTTTATGAAGCAAATGTGAGGCTAAAAGATCCAGTTTATGGATGCATGGGTGCAATTTCTTCTTTGCAACAACAAGTCCAATATCTAATAGCTGAACTCAATGCTGTGAGGGATGAAATAATCAAATACAAACTTAGGGAAGTTAATAATACCATCATACCCTCATCTTCTCATCATGTAATGCTTCCTTCTTCTTCATCATCGGAGGTCGTATCTATCGCCGTTCCGCCACCTCCTCCGCCACCTAATCATGACATACTTCCTCCTAATTCTTCAACTTCTTCTTCCATGGTTTACCCCCAACAGACTGATCCTTCCAATTATGGGACAATTTCAAGTGATAATATTTCCTATTTTGGTTGA 687 0.4105 MSRERERSDDEIGKKIKREGEGQKGRRQHMLDSQQEGASGGTLNTITPCAACKLLRRRCAQECSFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLKDPVYGCMGAISSLQQQVQYLIAELNAVRDEIIKYKLREVNNTIIPSSSHHVMLPSSSSSEVVSIAVPPPPPPPNHDILPPNSSTSSSMVYPQQTDPSNYGTISSDNISYFG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0189 228 MobiDBLite consensus disorder prediction 1 40 - -
Amo17g0189 228 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Amo17g0189 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 228 - -
Amo17g0189 228 MobiDBLite consensus disorder prediction 1 31 - -
Amo17g0189 228 Pfam Lateral organ boundaries (LOB) domain 48 144 IPR004883 -
Amo17g0189 228 MobiDBLite consensus disorder prediction 196 228 - -
Amo17g0189 228 MobiDBLite consensus disorder prediction 181 195 - -
Amo17g0189 228 MobiDBLite consensus disorder prediction 178 228 - -
Amo17g0189 228 Coils Coil 127 147 - -
Amo17g0189 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 32 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0189 Amo-Chr17 2717495 2719135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0189 41 228 AS2 family AT2G40470 66.667 9.80e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo17g0189 LOB 3.3e-39 No_clan