Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0118 ATGGATTCAAGTACTAATGTAGTTGCCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTATTTTTATGTGCACAAGAATCAATTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACATAGAACAGCCAGAACATCATGCTAATGACCCTGAACCAAGCCTGTGTATCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCGATCACACATTTCATCTTTCTTGCATTGATATATGA 291 0.4021 MDSSTNVVATVIGFGMSATFIIFMCTRINCGRIRGSVESRMMYEIESRIDIEQPEHHANDPEPSLCIICLADYREREVLRIMPKCDHTFHLSCIDI* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0118 96 PANTHER OS11G0150450 PROTEIN 3 64 - -
Amo17g0118 96 PANTHER OS11G0150450 PROTEIN 64 96 - -
Amo17g0118 96 Pfam RING-like zinc finger 66 94 IPR001841 -
Amo17g0118 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 96 IPR013083 -
Amo17g0118 96 SUPERFAMILY RING/U-box 65 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0118 Amo-Chr17 1550748 1551896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0118 62 95 C3H Transcription Factor Family AT3G03550 52.941 4.37e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0118 - - ccaj:109802319 161.384