Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0116 ATGATTCTTCACCTCAATCAAAATCGCTCCTTTCTCTTCGTAAAACCTAAGCTACCACCACCACCATTGCAACCACAAACCCGGTTACGTTTTTCCCTCAAAGCTCGAACCTTTCGAGTTTTTAAGTCCACCCATATCGCTACTTTGAATAACTTCTCTCCTGTTGAGTCTAAACGCGTGCCTCGTCATGTGAAAATTGAAGCTCAGCGTGTTCTTACGGATTACTTGCATTCAACACGTGGCTACAGCTTCTTGGATGCTGAGTATATCAGTAAGAATTGCCCCAACTTTGTTAAATCTTTGATTGCAAATACTTTTGTTGGTGGAAATGATGTCGATGTTGATGTTGATGGTGTTGCTCATTCATTGAGGAAGTTTCTAAGGTACAATCCCATTAACGAGTTTGAACCATTCTTTGAGAGCATAGGGATTAGCCCCTCTGAGTTGCAAGATTTTCTACCTAGTGGCATGTTTTTCTTAGCTGATGATTCTGCTTTGGTTGATAATTTCCATGTTCTGTGTAACTATGGTGTCCCTAGGAACAGGATTGGAGAGATTTATAAGGAAGCAAAAGAGGTATTTGGGTACCCTAAGGGGTTCTTGTTGGAGAAATTTAGAGAGTATGAAGAATTAGGGTTGAGTAAATCATTTATCATCAAGCTTGGTGTTTGTTGCCCTTCAATTTTGGTTTGTGATCATCATGGTGAATTTGTGGTTGTTCTTGATTGGTTAAAGAGAATTGGGATTGAAGATGATTGGATTGTGAGTTACATGTCTTATTCAAGGACATATAGTTGGAAGAAAATGCTTGATGCTATTCAACTTCTTGATGAAGTTGGTTATTCTGAGGAACAAATGCACAATTTGTTCAAGGCAAATCCTAAATTGTTATTGGAAGGTTTTGGGAAGAAGCTACGCTTGTTTTTGGTTAGATCACATAAGTTAGGTGTTAAGGTGAATGTTATGTATTCATATTTTATGGAATATCCTCATATACTATTAAACAAGTGTGCAAAAAATTTGTTGAGAGTGATTGATATTCTGTGTGCTATTGGAATGGAAACAGATGAAATTGCACGAATTTTGTCTAATTACATGCATCTATTCAGCACACATTCCTTCAAAGGTCCGAGAACTGTTATCTCGGAGTTGAAAGTTGAGAAAGCCGAATTACTCCAAGTCATAAAGGACGATCCACTGAAACTTATAAGTATGGCTTCAAGTTCGAAAAAGAAGAGCCCCAAACAGATATCAGTTTATGATCCGCGCAGACATTTAGACAAGATCACTTTCCTGCTGAAACTGGGGTATGCAGAGAACTCCGAGGAGATGGCGAATGCATTAAAAGTGTTCCGAGGGAGAGGTGATCTATTACAGGAGAGGTTTGATTGTTTGGTAGAAGCAGGTTTGGACTATAACAGTGTGATTGGAATGATAAAAAGAGCTCCTACGATTCTGAACCAAAAGAAAGATGTAATTAAAGAGAAGATTCATTTTGCCACAAACATCTTAGGCTATCCCTTAGAAAGCATTGTGGCATTCCCAACATACTTTTGCTATGATTTGGAGAAGATTGCTCAGAGGTTTTCAATGTATGCATGGTTGAAGGAGAGGAAGGTAGTGAATCCTTCCTTAACCTTGAGTACCATAGTTTCATCCAATGATAAACGGTTTGAAAAATATTTTGTAGATGTGCATCCTCAAGGTCCAACCATTTGGAAAAATATAAAGAGGTTATCAAAGAAAAACAAGAACAAGTAG 1761 0.3805 MILHLNQNRSFLFVKPKLPPPPLQPQTRLRFSLKARTFRVFKSTHIATLNNFSPVESKRVPRHVKIEAQRVLTDYLHSTRGYSFLDAEYISKNCPNFVKSLIANTFVGGNDVDVDVDGVAHSLRKFLRYNPINEFEPFFESIGISPSELQDFLPSGMFFLADDSALVDNFHVLCNYGVPRNRIGEIYKEAKEVFGYPKGFLLEKFREYEELGLSKSFIIKLGVCCPSILVCDHHGEFVVVLDWLKRIGIEDDWIVSYMSYSRTYSWKKMLDAIQLLDEVGYSEEQMHNLFKANPKLLLEGFGKKLRLFLVRSHKLGVKVNVMYSYFMEYPHILLNKCAKNLLRVIDILCAIGMETDEIARILSNYMHLFSTHSFKGPRTVISELKVEKAELLQVIKDDPLKLISMASSSKKKSPKQISVYDPRRHLDKITFLLKLGYAENSEEMANALKVFRGRGDLLQERFDCLVEAGLDYNSVIGMIKRAPTILNQKKDVIKEKIHFATNILGYPLESIVAFPTYFCYDLEKIAQRFSMYAWLKERKVVNPSLTLSTIVSSNDKRFEKYFVDVHPQGPTIWKNIKRLSKKNKNK* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0116 586 PANTHER CGI-12 PROTEIN-RELATED 49 578 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 Gene3D Transcription termination factor 3, mitochondrial 310 574 IPR038538 -
Amo17g0116 586 Gene3D Transcription termination factor 3, mitochondrial 163 309 IPR038538 -
Amo17g0116 586 SMART mt_12 323 354 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 SMART mt_12 508 541 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 SMART mt_12 184 214 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 Pfam mTERF 273 499 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 Pfam mTERF 457 559 IPR003690 GO:0003690|GO:0006355
Amo17g0116 586 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 49 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0116 Amo-Chr17 1498853 1500675 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo17g0116 mTERF 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0116 - - aip:107606700 1064.68