Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0109 ATGGAAAACTCAGACCACAACGAACCCGAAAAGAAGAGGCCTCACCTCACTTCCGTTTCTTCTCGCGTGGCGCGAAACTCTCCATCGAACAACAAAACCGCTGATGCTGGAGTCTTACAAGCACAGAACCAGCAGCTCGTTCAAAAGATTGACATCCAAAAGCGTGCTTTGCATGACCTTGAAGAAAAAATTAGAGAGTTAAAAGAGCGGCAAAATACCCATGATGATTTGTTAATTGCAGTGAACCAATGTTGGATTCAGTTGTCTGATGATCTGACTCTTCTTGGTGTACGAGCTGGTAGAAGCAAAGATGCATTACAAACACTAGATTACCATAATAACCGTCAAGGTTCACTTCCTTCATGCCCTGCAGAGGATATATTTCTGTGTAGATTGATCCAGAAAGATTCTGTTGATGGAAACAGTATTGGTGAGAGAATTAATTATGTTGAAGAAAGCCTTGCTTTACGCCGGTCATCTACGTTAGAGTTGTTGAAACTCCTTCAAGATACCATGGAGGCTCAGATGGAAAGAATTGACAGTATAGCCCAGGTTTTGCATGGCGAGTTATCTTCAGAAGATGCTATAATTCAGATGTCTCAGATTGATGACATGATGAAAGAAGAGGAAAGTAATTTACGTGAAATCATTAATGCTCTCAATGATTCACATAAAGAGTATACTATTGGAATTCAAAGTTATATCAGTTGGTGCTTACAAGATCAGTCTGAAGTTAAACGCCTTGCAGGTGACCTTGAAGAGAGCATAACTGGACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGAAAATGCAAAAGGATGCAGCGGCAGGAATGCAATCCCCTAGTGCTGATTCGGTTAACGGAAACTTGTCTCCTGAAAAACCCACAGACAGGACTATGAGTTTGCGTGAGCTGAAGGATTCAATTGAGGAAGCAAAGATACTGAATGCTGATCGTCTTACTGAGCTTCAAGAGGCACATGAAGAAAATGAAACCTTGACAAAGCAATTCCAAGATTTTCAGAATGAACTGAACGATGACAAGTATATACGCACTTCCAGAATATATTCATTGACGAATGATCAACTTCAACATTGGATTGCTGAGTTAGCTCGGTATAAGATGTTGGTAGAGTCTCTGCAGGCGGGAAGTGTCCATGTCACAAAATGGGAGAAGGAGCTGAACTCCAAATTGGAGTCTGTTGATACTGCAAGGCATGCCATTGACTGTTCAGATTCCAGGATTGAAGAGCTGGAGGTTCAGTTGCAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAAGATACTGGGAGAAAAGATATCAAATCCGAGTTTCGTGTGATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAGGTCAAGCGATGGAAGGATGCAGCTCATGAGGCGGTATCGTTACGCGAGAAAGCTCATTCACTAAGAGCTGTGTTGAGTGGGAAGACAAGCGAAGTTAGCAGCCTTGCAAACAAATGTACTGAACAGGATTTGGAAATTAAGTCTTTAAGAGCATTGATTGAAAAGTTACAGAAGGAGAAACTAGAGTTGGAATTCATTCTGGAAATGCATGGACAAGAGAATTATGATAAAAGTACTCTGGCAGAAATTAGAGAATCTGAAAATAAAGCCCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTTGAGTTAAGAGTAAAAGCTGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGAGCCAAGCTGGATGCAGCTGAGAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTGAAAGAGGCTGAGGCAGAGGCATATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTAGTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACTCTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCTGTTCTATCAGAAGGCATCAAATGTAATCAGGAGGAAAAAAACCTTCATGTCACCCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAGTGGCTGAAGTCTGCCCTTTCCTCTTCGGAGAAAGAATACGACCAAATACAGAAAGATGTGGCAGCAGTTGAAATGGAATTAGAAAGTGAAAGGAGTTCACGGATGAAGCTCGAGGAAGAACTCAGGGAAGTGAACAGGCAAATCGCCGAGCTGAGTTCTGAAACGGGTGAAACCGCAATACAAAAGCTCGAAGCAGAAATAAAGATCTGTAAGAACATGATTAAGTGCACAGTCTGTTCTGATCGGCCAAAGGAGGTGGTGATTGTCAAATGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTAGAGCTCAGGCACCGCAAGTGCCCTGCATGTGGAACAGCATTTGGACAAAGTGATGTTCGCTTTGTTAAAATATGA 2634 0.4146 MENSDHNEPEKKRPHLTSVSSRVARNSPSNNKTADAGVLQAQNQQLVQKIDIQKRALHDLEEKIRELKERQNTHDDLLIAVNQCWIQLSDDLTLLGVRAGRSKDALQTLDYHNNRQGSLPSCPAEDIFLCRLIQKDSVDGNSIGERINYVEESLALRRSSTLELLKLLQDTMEAQMERIDSIAQVLHGELSSEDAIIQMSQIDDMMKEEESNLREIINALNDSHKEYTIGIQSYISWCLQDQSEVKRLAGDLEESITGLEESRRKLVNLKMQKDAAAGMQSPSADSVNGNLSPEKPTDRTMSLRELKDSIEEAKILNADRLTELQEAHEENETLTKQFQDFQNELNDDKYIRTSRIYSLTNDQLQHWIAELARYKMLVESLQAGSVHVTKWEKELNSKLESVDTARHAIDCSDSRIEELEVQLQKCTIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAVLSGKTSEVSSLANKCTEQDLEIKSLRALIEKLQKEKLELEFILEMHGQENYDKSTLAEIRESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERDILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLVAEKQALAKQLQQINSLIDASKMRIAHVEEQMKAVLSEGIKCNQEEKNLHVTLEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERSSRMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0109 877 MobiDBLite consensus disorder prediction 1 35 - -
Amo17g0109 877 PANTHER RING FINGER PROTEIN-RELATED 12 877 IPR013956 GO:0004842|GO:0010390
Amo17g0109 877 Coils Coil 206 226 - -
Amo17g0109 877 MobiDBLite consensus disorder prediction 273 301 - -
Amo17g0109 877 SMART ring_2 825 863 IPR001841 -
Amo17g0109 877 Coils Coil 43 77 - -
Amo17g0109 877 Coils Coil 409 443 - -
Amo17g0109 877 CDD RING-HC_BRE1_like 823 864 - -
Amo17g0109 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Amo17g0109 877 MobiDBLite consensus disorder prediction 19 35 - -
Amo17g0109 877 Coils Coil 509 539 - -
Amo17g0109 877 Coils Coil 553 573 - -
Amo17g0109 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Amo17g0109 877 SUPERFAMILY RING/U-box 824 868 - -
Amo17g0109 877 Coils Coil 734 803 - -
Amo17g0109 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 876 IPR013083 -
Amo17g0109 877 Coils Coil 580 635 - -
Amo17g0109 877 MobiDBLite consensus disorder prediction 1 17 - -
Amo17g0109 877 MobiDBLite consensus disorder prediction 279 297 - -
Amo17g0109 877 SUPERFAMILY Tropomyosin 687 825 - -
Amo17g0109 877 Pfam Zinc finger, C3HC4 type (RING finger) 824 866 - -
Amo17g0109 877 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0109 Amo-Chr17 1460303 1472628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0109 809 872 RAD5 or RAD16-like Gene Family AT5G05130 32.812 6.16e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0109 K10696 - gmx:100796610 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0109 17 1460303 1472628 Amo07g0547 07 6478588 6490967 hybridization