LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g0109	ATGGAAAACTCAGACCACAACGAACCCGAAAAGAAGAGGCCTCACCTCACTTCCGTTTCTTCTCGCGTGGCGCGAAACTCTCCATCGAACAACAAAACCGCTGATGCTGGAGTCTTACAAGCACAGAACCAGCAGCTCGTTCAAAAGATTGACATCCAAAAGCGTGCTTTGCATGACCTTGAAGAAAAAATTAGAGAGTTAAAAGAGCGGCAAAATACCCATGATGATTTGTTAATTGCAGTGAACCAATGTTGGATTCAGTTGTCTGATGATCTGACTCTTCTTGGTGTACGAGCTGGTAGAAGCAAAGATGCATTACAAACACTAGATTACCATAATAACCGTCAAGGTTCACTTCCTTCATGCCCTGCAGAGGATATATTTCTGTGTAGATTGATCCAGAAAGATTCTGTTGATGGAAACAGTATTGGTGAGAGAATTAATTATGTTGAAGAAAGCCTTGCTTTACGCCGGTCATCTACGTTAGAGTTGTTGAAACTCCTTCAAGATACCATGGAGGCTCAGATGGAAAGAATTGACAGTATAGCCCAGGTTTTGCATGGCGAGTTATCTTCAGAAGATGCTATAATTCAGATGTCTCAGATTGATGACATGATGAAAGAAGAGGAAAGTAATTTACGTGAAATCATTAATGCTCTCAATGATTCACATAAAGAGTATACTATTGGAATTCAAAGTTATATCAGTTGGTGCTTACAAGATCAGTCTGAAGTTAAACGCCTTGCAGGTGACCTTGAAGAGAGCATAACTGGACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGAAAATGCAAAAGGATGCAGCGGCAGGAATGCAATCCCCTAGTGCTGATTCGGTTAACGGAAACTTGTCTCCTGAAAAACCCACAGACAGGACTATGAGTTTGCGTGAGCTGAAGGATTCAATTGAGGAAGCAAAGATACTGAATGCTGATCGTCTTACTGAGCTTCAAGAGGCACATGAAGAAAATGAAACCTTGACAAAGCAATTCCAAGATTTTCAGAATGAACTGAACGATGACAAGTATATACGCACTTCCAGAATATATTCATTGACGAATGATCAACTTCAACATTGGATTGCTGAGTTAGCTCGGTATAAGATGTTGGTAGAGTCTCTGCAGGCGGGAAGTGTCCATGTCACAAAATGGGAGAAGGAGCTGAACTCCAAATTGGAGTCTGTTGATACTGCAAGGCATGCCATTGACTGTTCAGATTCCAGGATTGAAGAGCTGGAGGTTCAGTTGCAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAAGATACTGGGAGAAAAGATATCAAATCCGAGTTTCGTGTGATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAGGTCAAGCGATGGAAGGATGCAGCTCATGAGGCGGTATCGTTACGCGAGAAAGCTCATTCACTAAGAGCTGTGTTGAGTGGGAAGACAAGCGAAGTTAGCAGCCTTGCAAACAAATGTACTGAACAGGATTTGGAAATTAAGTCTTTAAGAGCATTGATTGAAAAGTTACAGAAGGAGAAACTAGAGTTGGAATTCATTCTGGAAATGCATGGACAAGAGAATTATGATAAAAGTACTCTGGCAGAAATTAGAGAATCTGAAAATAAAGCCCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTTGAGTTAAGAGTAAAAGCTGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGAGCCAAGCTGGATGCAGCTGAGAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTGAAAGAGGCTGAGGCAGAGGCATATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTAGTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACTCTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCTGTTCTATCAGAAGGCATCAAATGTAATCAGGAGGAAAAAAACCTTCATGTCACCCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAGTGGCTGAAGTCTGCCCTTTCCTCTTCGGAGAAAGAATACGACCAAATACAGAAAGATGTGGCAGCAGTTGAAATGGAATTAGAAAGTGAAAGGAGTTCACGGATGAAGCTCGAGGAAGAACTCAGGGAAGTGAACAGGCAAATCGCCGAGCTGAGTTCTGAAACGGGTGAAACCGCAATACAAAAGCTCGAAGCAGAAATAAAGATCTGTAAGAACATGATTAAGTGCACAGTCTGTTCTGATCGGCCAAAGGAGGTGGTGATTGTCAAATGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTAGAGCTCAGGCACCGCAAGTGCCCTGCATGTGGAACAGCATTTGGACAAAGTGATGTTCGCTTTGTTAAAATATGA	2634	0.4146	MENSDHNEPEKKRPHLTSVSSRVARNSPSNNKTADAGVLQAQNQQLVQKIDIQKRALHDLEEKIRELKERQNTHDDLLIAVNQCWIQLSDDLTLLGVRAGRSKDALQTLDYHNNRQGSLPSCPAEDIFLCRLIQKDSVDGNSIGERINYVEESLALRRSSTLELLKLLQDTMEAQMERIDSIAQVLHGELSSEDAIIQMSQIDDMMKEEESNLREIINALNDSHKEYTIGIQSYISWCLQDQSEVKRLAGDLEESITGLEESRRKLVNLKMQKDAAAGMQSPSADSVNGNLSPEKPTDRTMSLRELKDSIEEAKILNADRLTELQEAHEENETLTKQFQDFQNELNDDKYIRTSRIYSLTNDQLQHWIAELARYKMLVESLQAGSVHVTKWEKELNSKLESVDTARHAIDCSDSRIEELEVQLQKCTIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAVLSGKTSEVSSLANKCTEQDLEIKSLRALIEKLQKEKLELEFILEMHGQENYDKSTLAEIRESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERDILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLVAEKQALAKQLQQINSLIDASKMRIAHVEEQMKAVLSEGIKCNQEEKNLHVTLEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERSSRMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI*	878

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g0109	877	MobiDBLite	consensus disorder prediction	1	35	-	-
	Amo17g0109	877	PANTHER	RING FINGER PROTEIN-RELATED	12	877	IPR013956	GO:0004842\|GO:0010390
	Amo17g0109	877	Coils	Coil	206	226	-	-
	Amo17g0109	877	MobiDBLite	consensus disorder prediction	273	301	-	-
	Amo17g0109	877	SMART	ring_2	825	863	IPR001841	-
	Amo17g0109	877	Coils	Coil	43	77	-	-
	Amo17g0109	877	Coils	Coil	409	443	-	-
	Amo17g0109	877	CDD	RING-HC_BRE1_like	823	864	-	-
	Amo17g0109	877	ProSitePatterns	Zinc finger RING-type signature.	840	849	IPR017907	-
	Amo17g0109	877	MobiDBLite	consensus disorder prediction	19	35	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g0109	Amo-Chr17	1460303	1472628	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g0109	809	872	RAD5 or RAD16-like Gene Family	AT5G05130	32.812	6.16e-07	51.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g0109	K10696		-	gmx:100796610	1283.47

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g0109	17	1460303	1472628	Amo07g0547	07	6478588	6490967	hybridization

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