Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0108 ATGCGTCGAGGTAGAGATGCCGTCGCCGTCGCCGCCGCAGCCGTAGCAGCAGATCCGACGCATCCAAACGCCGATTCAAGAAACAACGTCGGAGAAACGCGGTTTCGCGGAGTGAGGAAGCGACCATGGGGAAGATTCGCGGCGGAGATAAGGGATCCATGGAAGAAGGCGCGCGTGTGGCTTGGAACATTCGATTCCGCCGAGGACGCCGCCAGAGCATACGACGCTGCCGCCCGATCCTTCCGTGGACCAAAAGCAAAGACAAATTTTCCGTTCCCCAACGCCGAAATCGGAATCTCACACTCTCAGATTCCGATTCACGGTTACGATGATCCGGTTCACGGGTTCGGAAAGTACGAACCGGTTCAGGTGAATCGGCCAACGAGCAGCGGCATGAGCAGCACGGTCGAATCGTTCAGCGGACCTAGGGTTTCATCAACGGCGGCGCTTCCAGCGGTTGATCGTCGCCGAAGGAAACCGGAGAAGCCGGTTGTAGTTCCGGTCGACGATTGCCACAGCGATTGCGATTCGTCATCAACCATCGACGACGAGGATTCGTTCCGGAAAGCCCTAACTTTCGATCTAAACCTTCCGCCGCCGGAGGAAGACGACGTCGGTTTCACCGACGAGGAGATTCGCGCCACCGCCTTGTGCCTCTGA 660 0.5818 MRRGRDAVAVAAAAVAADPTHPNADSRNNVGETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNAEIGISHSQIPIHGYDDPVHGFGKYEPVQVNRPTSSGMSSTVESFSGPRVSSTAALPAVDRRRRKPEKPVVVPVDDCHSDCDSSSTIDDEDSFRKALTFDLNLPPPEEDDVGFTDEEIRATALCL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0108 219 MobiDBLite consensus disorder prediction 127 145 - -
Amo17g0108 219 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 MobiDBLite consensus disorder prediction 127 165 - -
Amo17g0108 219 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Amo17g0108 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 186 - -
Amo17g0108 219 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Amo17g0108 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 186 - -
Amo17g0108 219 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0108 Amo-Chr17 1448203 1449820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0108 1 219 AP2-EREBP Transcription Factor Family AT1G50640 49.153 9.51e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo17g0108 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0108 K09286 - cpap:110808864 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0108 17 1448203 1449820 Amo07g0546 07 6466876 6468366 hybridization