Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0106 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGACAACATTGAAGAAGCAATTCGGCGATTGAAAATCAATGACAATCGAGATAGAGATACTGCGGGTCAAACTAGCCCGTATCCGGATCGTCCTGGTGAACCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGTCGCTACAATCACCCCGCTAATGTTTCACTGGGTACTCATTATGGTGAAGAGCTCCCTGAGAGAAACGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGTAAGTATGGATCATCGTGTAAATATCATCATCCACGGGACAGACGAGGTGCTGCTCCTGTATCATTCAATGCTTTAGGCCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTAGCTTGCAAGTTTCATCATCCGCCGCATGCTACTTTTGGAGCTTCTGGAGTGGCTGCATCTCCTACCTCAATGATCCCCGCATCTGGATATGTTGGTGGATATCCGTATTCCTTACCGAGAATGCCATATTTATCTGGACAGGGCCTTCAGTCTTATGTGCCTCCTTTCTTTTCTTCTCCACAAGGAATTATACCCGGACAGGGTTGGAACAGCTACATGGGAAGTATGAACCCTGCAATGTCTACTGGTTTTCTTGGATCTAATCTTGTTTACGACTCTGTGAATCCGGGTGAGTCACTTTCTGGTGGGCAGGTAGTAAGTCTTAATCTCCCAGATAGGCCTGATCAGCCAGAATGCAGATACTATATGAACACAGGGACTTGCAAGTATGGATCTGATTGTAAGTTCCACCACCCGAAAGAAAGAATCGCCCAGTCATTCATAAATCCACTCGGCCTTCCTGTGCGACCTGGGCAAGCTATATGTTCTTATTATAGAATTTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATCTCACAGAACTATCGCTTGGCCACACCTACTGCTTTATCTGCACTGGACACCCCTCTCGACGGCAATCGAAGAGGGACTTTCCAACCACCCGAGACATCACCATCTAAATTATCGAGTGATGAGCATCAGCATTCGGATAATAATATCAATAATTCACAGGCCGCTGAAGATTCATCCAAACAAGCTGATCATACTACCTCAAATTCCTTTGAAGTGGCCTCGGAATCCTCCTTACATGACCAAGATGCTTGA 1269 0.45 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDTAGQTSPYPDRPGEPDCLYFLRTGMCGYGTNCRYNHPANVSLGTHYGEELPERNGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAAPVSFNALGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPPHATFGASGVAASPTSMIPASGYVGGYPYSLPRMPYLSGQGLQSYVPPFFSSPQGIIPGQGWNSYMGSMNPAMSTGFLGSNLVYDSVNPGESLSGGQVVSLNLPDRPDQPECRYYMNTGTCKYGSDCKFHHPKERIAQSFINPLGLPVRPGQAICSYYRIYGICKYGPTCKFDHPVLAISQNYRLATPTALSALDTPLDGNRRGTFQPPETSPSKLSSDEHQHSDNNINNSQAAEDSSKQADHTTSNSFEVASESSLHDQDA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0106 422 MobiDBLite consensus disorder prediction 354 422 - -
Amo17g0106 422 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Amo17g0106 422 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g0106 422 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Amo17g0106 422 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Amo17g0106 422 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Amo17g0106 422 SUPERFAMILY CCCH zinc finger 307 335 IPR036855 GO:0046872
Amo17g0106 422 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Amo17g0106 422 MobiDBLite consensus disorder prediction 383 415 - -
Amo17g0106 422 MobiDBLite consensus disorder prediction 28 47 - -
Amo17g0106 422 Gene3D - 266 350 - -
Amo17g0106 422 SUPERFAMILY CCCH zinc finger 270 295 IPR036855 GO:0046872
Amo17g0106 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 398 - -
Amo17g0106 422 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Amo17g0106 422 Gene3D - 121 168 - -
Amo17g0106 422 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Amo17g0106 422 Gene3D - 45 120 - -
Amo17g0106 422 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Amo17g0106 422 PANTHER PROTEIN PHOSPHATASE RELATED 4 398 - -
Amo17g0106 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Amo17g0106 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Amo17g0106 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 335 IPR000571 GO:0046872
Amo17g0106 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Amo17g0106 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Amo17g0106 422 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Amo17g0106 422 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Amo17g0106 422 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Amo17g0106 422 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Amo17g0106 422 SMART c3hfinal6 309 336 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0106 Amo-Chr17 1398636 1402831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0106 1 413 C3H Transcription Factor Family AT1G04990 46.262 5.02e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g0106 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0106 - - vra:106765262 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0106 17 1398636 1402831 Amo17g0106 17 1398636 1402831 ECH