Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0100 ATGCAAGTAGCAGAACTCCAACAAAACCTGGTTCAACACCAACACAAAGAGAACAAGATCATGTGCAAGAAGATCCAGCTAAGTGTCTCTGACACTGAGCTCCATAATAATCACCATCATAATTCATGTGGTTGTGATGTTGATGGGTGCCACAAGGTTGAGGGTGAGGATCTATTCATTCCACCCCTCAATTTTGCAATGGTTGATAATGGCATTTTCAGGTCTGGTTTCCCTGAACCTGCTAACTTCTCCTTCCTTCAGACCCTTGCTCTCCGCTCTATCATATATCTATGTCCTGAGCCATATCCAGAGGCTAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAATTTGGAATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCAGAAGACACAATCCGTGAAGCATTAAAAGTTGTCCTTGATGTCAGGAACCATCCACTTATAATTCATTGTAAGCGGGGGAAGCACCGAACAGGGTGTTTAGTAGGATGCTATAGGAAGTTGCAGAAATGGTGTTTGTCTTCTGTGTTTGATGAATACCAACGCTTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTCGTTGAATTGTTTGATATTTCAACCATCAAGCATCTCCCTATAACATTTTCATCTTTCAAGAGGTTGGATTGA 672 0.4196 MQVAELQQNLVQHQHKENKIMCKKIQLSVSDTELHNNHHHNSCGCDVDGCHKVEGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLALRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPLIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISTIKHLPITFSSFKRLD* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0100 223 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 11 218 - -
Amo17g0100 223 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 206 IPR029021 -
Amo17g0100 223 PRINTS Plant and fungal dual specificity phosphatase signature 59 76 IPR020428 GO:0016791
Amo17g0100 223 PRINTS Plant and fungal dual specificity phosphatase signature 96 109 IPR020428 GO:0016791
Amo17g0100 223 PRINTS Plant and fungal dual specificity phosphatase signature 115 129 IPR020428 GO:0016791
Amo17g0100 223 PRINTS Plant and fungal dual specificity phosphatase signature 132 146 IPR020428 GO:0016791
Amo17g0100 223 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 218 - -
Amo17g0100 223 Gene3D Protein tyrosine phosphatase superfamily 58 208 IPR029021 -
Amo17g0100 223 ProSitePatterns Tyrosine specific protein phosphatases active site. 154 164 IPR016130 GO:0016311|GO:0016791
Amo17g0100 223 CDD PFA-DSP_Siw14 58 205 - -
Amo17g0100 223 Pfam Tyrosine phosphatase family 60 211 IPR004861 -
Amo17g0100 223 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 218 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0100 Amo-Chr17 1348108 1355013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0100 55 221 Protein tyrosine phosphatase (PTP) family AT4G03960 76.048 4.78e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0100 K18045 - gmx:100814279 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0100 17 1348108 1355013 Amo17g0100 17 1348108 1355013 ECH