Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0099 ATGTCAAATTTCCCTGATGCGGTGGCCGATGGCCGGAGGTCCGGCAAGGCACCGGAGAAGTCCAATTTTTCTCAGACTTGCAGCCTCTTGAGCCAGTTCTTGAAGGAGAAGCGTACTTCTGGAGCTTCCACTCTCGGAGTTGGTTCTAAAATGGAGCCTAGAGTAGGTACCAAGGATTTTCTAGCCAGTATTCATAATTCAGATGGAGCTTTGAGACTAAATTCTGCGGCTATGGATTCCCTTCCCCAGCTTGTGGAAAATCCCTGCATCAAGAAGTCTAATATTAGGTCATTGGAACCTGAAACTCCACAATTGACYATATTCTATTCCGGAAAAATGTTGGTATTTGATGCCTTTCCACCAGACAAGGCCACAGAGGTAATGGAGTTAGCCACCAAGTTAGCCTCGAACAGTTCCATTGTCGAACAAAGCCAGCCCAGTGCTTCGGTTGCGACTGAAAATTTGAGTAAAGACAAAGTGCCGCAGACAAATAATGCCTCTGAAACTCCTAGGCCAGGAAAGCAAGCTGTTGGTTCCGATATGAGGTATCCAAGGAGAGCTTCACTTGTAAAATTCCTTGAGAAGAGAAAAGAAAGGGTCATTGCTAGAGGACCTTACCAAGTAAACAACCCAAATCCCAAGCCTGAGGGTAGCAGTTCCGGCGGCGAACCTTACCCGGTAAACWGCCCGAATTCGAAGCAYGAGGAAGGCAGTTCAGGGGTTGTACCTGAAGATCARTCCTCCAAACACTTTGACCTTAACTCATAG 768 0.4674 MSNFPDAVADGRRSGKAPEKSNFSQTCSLLSQFLKEKRTSGASTLGVGSKMEPRVGTKDFLASIHNSDGALRLNSAAMDSLPQLVENPCIKKSNIRSLEPETPQLTIFYSGKMLVFDAFPPDKATEVMELATKLASNSSIVEQSQPSASVATENLSKDKVPQTNNASETPRPGKQAVGSDMRYPRRASLVKFLEKRKERVIARGPYQVNNPNPKPEGSSSGGEPYPVNXPNSKHEEGSSGVVPEDQSSKHFDLNS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0099 255 MobiDBLite consensus disorder prediction 200 255 - -
Amo17g0099 255 Pfam Jas motif 185 207 IPR018467 -
Amo17g0099 255 MobiDBLite consensus disorder prediction 144 172 - -
Amo17g0099 255 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Amo17g0099 255 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 229 IPR040390 -
Amo17g0099 255 SMART tify_2 98 133 IPR010399 -
Amo17g0099 255 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g0099 255 MobiDBLite consensus disorder prediction 144 183 - -
Amo17g0099 255 MobiDBLite consensus disorder prediction 241 255 - -
Amo17g0099 255 Pfam tify domain 99 131 IPR010399 -
Amo17g0099 255 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0099 Amo-Chr17 1307681 1310633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0099 8 221 Tify Gene Family AT1G19180 32.787 3.05e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo17g0099 tify 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0099 K13464 - gmx:100778559 335.109