Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0071 ATGGACATGATGATGAATATTGACGAATCCAACAACAACAACAACAACAACAACATGATGAATAGTGATAGTAATAAGTTTCTTTCGTCTATTATGGCTACTGTCATCAACAAGAACACCAACAATTCTTCTTCTTCTTCACCTTCTACCTTCAACATGCCTCATCATCATAACTATACCAGCCACCACCAGCAACAACAACAAACCGCCACAAACACCAACAGCAACGGCGCCGGAAGTAGTAGTGTACAAGTTAGGGATAAGATCATGGCACATCCTCTCTTCCCTCGTCTCTTATCTTCTTACCTTAATTGCTTGAAGGTTGGAGCACCTCCAGAAGTGGTGGGTAGGTTAGAGGAGTTATGTGGAAAGTGTTCATCATCATCATCATCAAGAAGATCAGATAGTAATTCATGCATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTCATTAAATATGAGCAAGAGATTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCAACAATTGATTCCCAGCTTAAGGCCCTTTCTCTTTCACCACATTTTGGTACTAATCATCAAAGTGAATCATCATCATCTTTACTACAAAATGAGGTTGATGTGCTTGATGAGAACAACAACAATAATAGGAACATGGATACAAGTCAAGCTGAAGAAGACAGGGAACTAAAGATCCAGCTTCTGAAGAAGTACAGTGGATATCTTGGTGGACTCAAGAAGGAGTTTCTCAAGAAGAAAAAGAATGGAAAGTTGCCAAAAGAAGCTCGCCAGCAGCTTCTTGATTGGTGGAACAGACATTACAAATGGCCTTATCCTTCGGAATCCCAGAAACAGGCACTAGCAGAATCAACAGGGCTAGATTTGAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAGCCTTCTGAGGACATGCAATTTGCTGTTATGGATGCAACTAACCACTACATGGAAACTATCATGTGCAAGCCATTTCCCATGGATACCATGCCTATTCTATTTTAA 1044 0.4061 MDMMMNIDESNNNNNNNNMMNSDSNKFLSSIMATVINKNTNNSSSSSPSTFNMPHHHNYTSHHQQQQQTATNTNSNGAGSSSVQVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVGRLEELCGKCSSSSSSRRSDSNSCIGEDPGLDQFMEAYCEMLIKYEQEISKPFKEAMLFFSTIDSQLKALSLSPHFGTNHQSESSSSLLQNEVDVLDENNNNNRNMDTSQAEEDRELKIQLLKKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETIMCKPFPMDTMPILF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0071 347 ProSiteProfiles ELK domain profile. 231 251 IPR005539 GO:0003677
Amo17g0071 347 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Amo17g0071 347 Pfam Homeobox KN domain 271 310 IPR008422 GO:0003677|GO:0006355
Amo17g0071 347 MobiDBLite consensus disorder prediction 38 82 - -
Amo17g0071 347 CDD homeodomain 263 315 IPR001356 GO:0003677
Amo17g0071 347 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 9 338 - -
Amo17g0071 347 ProSiteProfiles 'Homeobox' domain profile. 251 314 IPR001356 GO:0003677
Amo17g0071 347 SMART HOX_1 253 318 IPR001356 GO:0003677
Amo17g0071 347 ProSitePatterns 'Homeobox' domain signature. 289 312 IPR017970 GO:0000981|GO:0006355
Amo17g0071 347 SUPERFAMILY Homeodomain-like 253 324 IPR009057 -
Amo17g0071 347 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Amo17g0071 347 Pfam KNOX1 domain 85 125 IPR005540 GO:0003677|GO:0005634
Amo17g0071 347 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 338 - -
Amo17g0071 347 SMART ELK_2 231 252 IPR005539 GO:0003677
Amo17g0071 347 Gene3D - 249 322 - -
Amo17g0071 347 Pfam ELK domain 231 252 IPR005539 GO:0003677
Amo17g0071 347 Pfam KNOX2 domain 139 185 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0071 Amo-Chr17 865673 871029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0071 69 341 Homeobox Transcription Factor Family AT1G62360 60.000 1.21e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo17g0071 KNOX2 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0071 - - ahf:112702242 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0071 17 865673 871029 Amo17g0071 17 865673 871029 ECH