Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0062 ATGCAATCCAAGTTTCTTTACAAAGTTGAAGATATTGTTAGATACAACGAAGGCATATACTCATACTCATATCCATCACAAACCAGAATAAACGTTCCAATTCCTTGTGATTGCATCAATGATGGCGAGTTTCTGGGCCACACATTCCAGTACTCAGTTACTCTAGGTGACAACTACTCAGCCATTGCCAGTGGGAGCTTTTCCAACTTAGTAACTACAGAGTGGCTTCAGAACACTAACAATTATCCAAAAGATGCTATTCTTGCTGGAGGAACGGTTAATGTGACTGTTAACTGTTCTTGTGGAGACAGTAATATTAGCAAAGATTATGGACTGTTCATCACATACCCTCTTAGGACTGAGGATTCTTTGCAGTCAATTGCAAACCAGACAAAGCTTGATCCTGAGTTGTTGATGAAATACAACCCCGGTGTAAATTTCAACAAAGGGAGTGGTCTAGTTTATATTCCCGGCAGAGATGAAAACGGTAACTATCCGCCTCTTCACCCAAGCTCTGGAGGTCTACCACGTAGGGTTGTTGCTGGAATATCTGTTGGAGTTGTAGCAGTAATTATGTTATCAGCATTTTGTGTTTATATGAAGTGTTTGAAGGTATGGAAGAAAAAACTGCGAGCAGAATATTCCGGTTGGAAAACTGCTCGAGCTAGGGAAGATAAAGCCCCTAATAGCTTCGCAAACATAAGTGCAGAAAAATCAGCAGAGTTTTCATATGAAGAACTGGCCCATGCCACAAATAACTTCAATTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAATCTATTATGCAGAGCTGAATGGCAAGAAAGTTGCAATAAAGAAGATGGACATGAAAGCATCAAAAGAATTTCTCGCAGAACTGAAAGTTTTGACACATGTTCAGCACTTAAACCTGGTCCATTTGATTGGATATTGTGTTAAGGACTTCCTTTTCCTTGTTTATGAATACATTGACAATGGAAACTTAAGCGAACATCTACGAAATTCAGATAGAGAACCTTTGCAGTGGTCTACCCGGATTCAAATAGCTCTAGATTCAGCCAGGGGACTTGAATATATTCATGAACATACAAAGCCTGTATATATCCATCGCGATATAAAGTCGGCAAACATATTATTAGACAAATCCTTCCATGGAAAGGTTGCAGATTTCGGACTAGCAAAGCTGATTGATACTGGAAGTTCCTCAGCTCCCACTGCTAATATGGCAGGCACATTTGGTTACATGCCACCAGAGTATGTATATGGCAGAGTTTCTCCTAAATTAGATGTCTTTGCTTTTGGGGTTGTCCTTTATGAGCTTATTTCTGCTAAAGAAGCTGTGATCAATGGTGGTGCTGAAATAAAGGGTCTTGTAGCTTTGTTTCATGAAGTTTTTGATCAGCCAGAACCTAAAGAAGGTCTTAAAGAACTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGGTTCAGTTTTCAAGATGGCACAACTTGCCAATGCATGTACAGAGGCAGATCCGAAGCGGCGTCCGAAGATGAGATCGGTGGTGGTTGCTCTTATGACACTTAGTTCAAGCACTGAGAATTGGGACATTGCTTCCTTCTATGAAAATCCAGCTCTTGTGAATCTAGTATCTGGTAGATAG 1650 0.403 MQSKFLYKVEDIVRYNEGIYSYSYPSQTRINVPIPCDCINDGEFLGHTFQYSVTLGDNYSAIASGSFSNLVTTEWLQNTNNYPKDAILAGGTVNVTVNCSCGDSNISKDYGLFITYPLRTEDSLQSIANQTKLDPELLMKYNPGVNFNKGSGLVYIPGRDENGNYPPLHPSSGGLPRRVVAGISVGVVAVIMLSAFCVYMKCLKVWKKKLRAEYSGWKTARAREDKAPNSFANISAEKSAEFSYEELAHATNNFNLANKIGQGGFGEIYYAELNGKKVAIKKMDMKASKEFLAELKVLTHVQHLNLVHLIGYCVKDFLFLVYEYIDNGNLSEHLRNSDREPLQWSTRIQIALDSARGLEYIHEHTKPVYIHRDIKSANILLDKSFHGKVADFGLAKLIDTGSSSAPTANMAGTFGYMPPEYVYGRVSPKLDVFAFGVVLYELISAKEAVINGGAEIKGLVALFHEVFDQPEPKEGLKELVDPRLGDNYSIGSVFKMAQLANACTEADPKRRPKMRSVVVALMTLSSSTENWDIASFYENPALVNLVSGR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0062 549 PANTHER LYSM RECEPTOR KINASE 1B 1 549 - -
Amo17g0062 549 SUPERFAMILY Protein kinase-like (PK-like) 233 521 IPR011009 -
Amo17g0062 549 CDD STKc_IRAK 260 518 - -
Amo17g0062 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Amo17g0062 549 Gene3D Transferase(Phosphotransferase) domain 1 325 539 - -
Amo17g0062 549 Gene3D Phosphorylase Kinase; domain 1 225 324 - -
Amo17g0062 549 Pfam Protein tyrosine and serine/threonine kinase 255 519 IPR001245 GO:0004672|GO:0006468
Amo17g0062 549 ProSiteProfiles Protein kinase domain profile. 254 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0062 549 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 549 IPR044812 GO:0019199|GO:0045087
Amo17g0062 549 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Amo17g0062 549 SMART serkin_6 254 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0062 Amo-Chr17 699494 704100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0062 10 549 Receptor kinase-like Gene Family AT3G21630 54.464 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo17g0062 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0062 - K13429 mtr:MTR_5g086030 738.413