Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0060 ATGAAAGCCTATGGTAGCATCATAGGTTACAGTGTAGAGAAATCAACTGAGTTTTCCTTTCAAGAACTAGCCAATGCCACAAATAATTTCAATTTGGCAAACAAAATAGGTCAAGGTGGTTTTGGGGGAATATATTATGCAGAGCTGAATGGCGAGAGAACTGCAATAAAAAAGATGGACAAGAAAGCATCAAAAGAGTTTCTTGCAGAACTGAAAGTGATGACCCGTGTTCATCACATAAACCTGGTGCGGTTGATTGGATATTGCGTTAAGGGTTCTCTTTTCCTTGTTTATGAATTCATTGACAACGGAAACTTGAGCCAACATCTACAAGATTCAGATAGAAAACCTTTGTCATGGTCTAACCGGATTCAAATAGCCCTGGATTCAGCCAGGGGAATTGAATATATTCATGAACATACAATGCCTGTATATATACATCGCGACATCAAATCAGCAAATATTTTAATAGACAAATACTTCCATGGAAAGGTGGCAGATTTTGGACTAGCAAAGCTGATTGATGTAGGAGGTTCATCAGTTCCAACTGATAAAATGGCAGGCACATTTGGTTACATGCCACCAGAGTACGTATTTGGCAAAGTTTCTCCTAAAGTAGATGTCTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCTGCAAAAGAAGCTGTGATGAAGGATGGTGATGAAATTAAAGGCCTTGTGGCATTGTTTGATGAAGTTTTTAAGCAGCCAGATCCAAAAGAAGGTCTTAAAAATCTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGTTGGCACAACTTGCCAAGGCATGTACTGAGGGAGATCCGCAGCGACGTCCAAAGATGAGATCTGTTGTGCTTGCTCTTGGGACATTAAGTTCAGCCACTGAGAATTGGGATCTGATTCTATGA 936 0.3942 MKAYGSIIGYSVEKSTEFSFQELANATNNFNLANKIGQGGFGGIYYAELNGERTAIKKMDKKASKEFLAELKVMTRVHHINLVRLIGYCVKGSLFLVYEFIDNGNLSQHLQDSDRKPLSWSNRIQIALDSARGIEYIHEHTMPVYIHRDIKSANILIDKYFHGKVADFGLAKLIDVGGSSVPTDKMAGTFGYMPPEYVFGKVSPKVDVYAFGVVLYELISAKEAVMKDGDEIKGLVALFDEVFKQPDPKEGLKNLVDPRLGDNYSIDSVFKLAQLAKACTEGDPQRRPKMRSVVLALGTLSSATENWDLIL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0060 311 PANTHER LYSM RECEPTOR KINASE 1B 6 309 - -
Amo17g0060 311 Pfam Protein tyrosine and serine/threonine kinase 31 295 IPR001245 GO:0004672|GO:0006468
Amo17g0060 311 Gene3D Phosphorylase Kinase; domain 1 15 100 - -
Amo17g0060 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Amo17g0060 311 Gene3D Transferase(Phosphotransferase) domain 1 101 308 - -
Amo17g0060 311 SMART serkin_6 30 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0060 311 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 309 IPR044812 GO:0019199|GO:0045087
Amo17g0060 311 ProSiteProfiles Protein kinase domain profile. 30 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0060 311 SUPERFAMILY Protein kinase-like (PK-like) 12 296 IPR011009 -
Amo17g0060 311 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Amo17g0060 311 PIRSF ILK 5 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0060 Amo-Chr17 693136 694898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0060 7 309 Receptor kinase-like Gene Family AT3G21630 67.320 3.82e-149 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo17g0060 PK_Tyr_Ser-Thr 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0060 - K13429 mtr:MTR_5g086030 462.611