Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0052 ATGTTTGGTGAAATGGATAGAAAGCAAGAACAAGAAAAAGGTAACCTGAATAATAATAATAACAATAATAATAATAATAAGTCTGGCATTGATGTTACTCTAATATCTGCCACCACCAAAGTTCCAAAAGCAGTTTCGCCGGTTTCCTCTGCTGCCGAGGGGGAAGCCTTAAGGCGGCCGCGTGGCAGGCCTGCCGGCTCCAAGAACAAGCCGAAGCCACCAATAATTGTGACAAGGGACAGTGCTAATGCACTCAAGGCTCATGCTATGGAAGTAAGCTCTGGCTGTGATGTGAATGAGAGCTTGTTGAACTTTGCAAGGAGGAAGCAGAGAGGCCTCTGCATACTAAGTGGAACTGGCTGTGTGACAAATGTAACTCTGCGCCAACCGGCCTCATCCGGCGCCATTGTGACTCTTCACGGCCGATTCGAGATCCTCTCATTGCTGGGGTCAATCCTTCCCCCACCAGCACCACCAGGAATCACTGGCCTCACCATTTACTTGGCTGGTGCTCAGGGGCAAGTTGTAGGAGGTGCTGTTGTTGGTGCCTTGATTGCCTCAGGACCTGTTGTGATCATGGCTGCATCATTCATGCATGCTACCTTCGATCGCCTGCCATTGGAAGACGAAGAACTCACGGCTGCAATGCAGAATCAGCATTACCAAAACGGACGCACCACACATCATCTCGATATCTCAGACTTGTATGCAATGCCACAGAACCTTCTCACCAATGGAACAATGGCACCAGAGATATATTCTTGGGCACCAGGGAGGAACTTGTCAAAAAGCTGA 795 0.4893 MFGEMDRKQEQEKGNLNNNNNNNNNNKSGIDVTLISATTKVPKAVSPVSSAAEGEALRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILSGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDEELTAAMQNQHYQNGRTTHHLDISDLYAMPQNLLTNGTMAPEIYSWAPGRNLSKS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0052 264 ProSiteProfiles PPC domain profile profile. 82 220 IPR005175 -
Amo17g0052 264 PIRSF ESCAROLA 3 260 IPR014476 GO:0003680
Amo17g0052 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 15 263 - -
Amo17g0052 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 263 IPR014476 GO:0003680
Amo17g0052 264 MobiDBLite consensus disorder prediction 1 30 - -
Amo17g0052 264 MobiDBLite consensus disorder prediction 14 30 - -
Amo17g0052 264 Gene3D - 86 222 - -
Amo17g0052 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 213 - -
Amo17g0052 264 MobiDBLite consensus disorder prediction 42 75 - -
Amo17g0052 264 CDD DUF296 88 168 IPR005175 -
Amo17g0052 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 197 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0052 Amo-Chr17 645644 646438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0052 5 263 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 66.667 1.92e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0052 - - vra:106765118 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0052 17 645644 646438 Amo17g0052 17 645644 646438 ECH