Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0049 ATGGCTAATGAAGATAAAGATCAATTTCACTTTGACCCTTTCTATTACAACAATCATGAACTCAACCAATCAAACTTTCCCTTGTTTAGAATGATTACTAATACTTCTTCTTCATCTCATCATCATCAAGAAGGGTTTATTGATAACAACACTACAAGTTTCACTGATTGTTTGTTACATGGTAATTCCATGGATTATAACACRCTCTCTAGAGCCTTTGACTTGTCTTGTTCTTCACCTGAAGTCATCTCATCATCCATTGATGAAAACAAGAATCAACTACCATCAACTGTTGTTGGTGGAGACTCAACAACACTCAATTCCTCAGTTTCTTCTTCATCTAATGAAGCTGATGCTTCACTRACTGAAGAAGACTCATCATCCAAAAGTACCAAGAAACATGAGAAGCAACCAAAAGGGTGTGAAGAAGAAGAAGAAGATGAAGATGCAAAGTCTAAGAAAGAGAATAATAACAATAAGCCAAAGAAGAAAGAGAAAAAGCCAAGAGAGCCACGCTTTGCATTCATGACCAAAAGTGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTAAAAAATAGTCCATATCCAAGGAGTTATTATAGATGCACTACTCAGAAGTGCAATGTGAAGAAGAGAGTGGAGAGGTCATACCAAGARCCATCAATTGTGATCACAACATATGAAGGGCAGCACAACCACCACTGCCCGGCGACGCTGCGCGGCAGCGCCGCCACCGTGTTTGCTTCTTCACCTTCCCTTTTTGCTTCCACATCCCTAATAAGGCCAACAAGTTTCCCCCAAGATTTCCTCTCTCAATTGCTTCCAACTTACACTACTAACAATAGTAACACCCATCAACCACTAATAAATAATAATAATCATCATCAAAACCCTATTTTCCAATTAAACCTTGGCCATAATCCTCATTATCCTCCTCCTCCACCGCCATCACAAGAGCATCAAGAACAACATCATCTTCAATTCCCTCATGACTATGGCTTGTTGCAAGACCTACTACCTTCATTCCCAGGCAAACAAGAACCTTAA 1071 0.3922 MANEDKDQFHFDPFYYNNHELNQSNFPLFRMITNTSSSSHHHQEGFIDNNTTSFTDCLLHGNSMDYNTLSRAFDLSCSSPEVISSSIDENKNQLPSTVVGGDSTTLNSSVSSSSNEADASLTEEDSSSKSTKKHEKQPKGCEEEEEDEDAKSKKENNNNKPKKKEKKPREPRFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQEPSIVITTYEGQHNHHCPATLRGSAATVFASSPSLFASTSLIRPTSFPQDFLSQLLPTYTTNNSNTHQPLINNNNHHQNPIFQLNLGHNPHYPPPPPPSQEHQEQHHLQFPHDYGLLQDLLPSFPGKQEP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0049 356 Pfam WRKY DNA -binding domain 185 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0049 356 MobiDBLite consensus disorder prediction 88 121 - -
Amo17g0049 356 ProSiteProfiles WRKY domain profile. 179 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0049 356 MobiDBLite consensus disorder prediction 313 334 - -
Amo17g0049 356 MobiDBLite consensus disorder prediction 122 175 - -
Amo17g0049 356 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 18 304 - -
Amo17g0049 356 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 304 IPR044810 GO:0003700
Amo17g0049 356 SMART WRKY_cls 184 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0049 356 MobiDBLite consensus disorder prediction 88 175 - -
Amo17g0049 356 Gene3D WRKY domain 169 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0049 356 SUPERFAMILY WRKY DNA-binding domain 176 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0049 Amo-Chr17 605268 608370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0049 1 356 WRKY Transcription Factor Family AT4G18170 41.667 2.12e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g0049 WRKY 6.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0049 - - adu:107496496 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0049 17 605268 608370 Amo17g0049 17 605268 608370 ECH