Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0048 ATGTCATCGAATAGTTCTTTGAATGTCGAATTGTCGAAGAAGACATCTTTTTTCGGTTTGAAACGATGGGTTTTGATTGGGATCGGAGTCAGTGCCTTTATAGTGCTGATTCTTGGTGTATTGTCTATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTGTTGACAAGTACTCTCAATCCAAGATACCGAATGTGTCGAAAGATATCAGGGTTGATAAGGTTGGGGTGCAGAGTTCTTATGTGGAGCCGGAAAATGTGTCTGTTTCAGTTCATGACAAGGCAAATGATAAGAGTTCAGAGAAGATAACAGTTCATTTGGCCATGAGCAAATCCAGTGATCATGATAATATTAGTCAGTGCAGTTCAAGCTATCACCACGAGAGAGGATTTAGTTCGATGTCCGGGGAAGAAGGAAGTTCCGGGAATGGTAAGAAGCAATCTATGTTGTCATATGGAGGAGGGATGGTGACTGCCTCTCCTTTAGTTGGGTTGCCGGAATTTTCTCATCTCGGGTGGGGCCACTGGTTTACACTCAGAGATCTTCAACTAGCAACCAATCGTTTCTCGCAAGAGAATGTTATCGGTGAGGGTGGCTATGGGGTTGTTTATAGGGGCAGATTGATCAATGGAAGCGAGGTGGCAGTAAAGAAGCTTCTTAACAATTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGAGGCGATAGGCCATGTTAGACATAAACATCTCGTGCGCCTGCTTGGATATTGCGTAGAGGGTGTTAACAGGCTGCTAGTGTATGAATATGTGAATAATGGTAACTTAGAGCAATGGCTGCATGGCTCCATGGAACAGGGGACACTAACTTGGGAGGCACGCATCAAAGTTGTGCTCGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATTGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAATATATTGATCGATGACGAGTTCAACGCAAAGGTTTCTGATTTCGGTCTGGCCAAACTATTGGATTCAGGAGAAAGTCACATAACAACTAGAGTTATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATAGTGGCCTCTTAAATGAGAAGAGCGACATTTACAGCTTCGGTGTCCTCCTGCTGGAAGCAGTTACCGGAAGGGACCCTGTAGACTATGCTCGGCCGCCTAATGAGGTTAATCTGGTTGAATGGCTCAAGATGATGGTGGGAACAAGGAGGGCCGAGGAAGTAGTTGACTCGAGACTTGAGGTTAAACCAACAACACGCGCTTTGAAGCGTGCCCTTCTTGTTGCGCTGAGGTGCGTCGATCCTGATGCGGATAAAAGGCCTAAAATGAGTCAAGTTGTAAGGATGCTTGAAGCCGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAAGAGCCGCACTGCCAGCATGGAAATCGAGTCTGTTAGTTGCGGTCCATCCAATGGCGAAAAGGCAGGGAATTCCGAAGGCATTGTGCCGGCGAGAATGGAGGGACAGGGACAGGATTGA 1539 0.4581 MSSNSSLNVELSKKTSFFGLKRWVLIGIGVSAFIVLILGVLSIWVMFRRKSRRSVDKYSQSKIPNVSKDIRVDKVGVQSSYVEPENVSVSVHDKANDKSSEKITVHLAMSKSSDHDNISQCSSSYHHERGFSSMSGEEGSSGNGKKQSMLSYGGGMVTASPLVGLPEFSHLGWGHWFTLRDLQLATNRFSQENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVNRLLVYEYVNNGNLEQWLHGSMEQGTLTWEARIKVVLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPPNEVNLVEWLKMMVGTRRAEEVVDSRLEVKPTTRALKRALLVALRCVDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESVSCGPSNGEKAGNSEGIVPARMEGQGQD* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0048 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Amo17g0048 512 SMART serkin_6 189 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0048 512 MobiDBLite consensus disorder prediction 466 512 - -
Amo17g0048 512 ProSiteProfiles Protein kinase domain profile. 189 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0048 512 SUPERFAMILY Protein kinase-like (PK-like) 173 461 IPR011009 -
Amo17g0048 512 MobiDBLite consensus disorder prediction 479 493 - -
Amo17g0048 512 CDD STKc_IRAK 195 460 - -
Amo17g0048 512 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Amo17g0048 512 MobiDBLite consensus disorder prediction 110 147 - -
Amo17g0048 512 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0048 512 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Amo17g0048 512 Coils Coil 209 229 - -
Amo17g0048 512 PANTHER OS01G0323000 PROTEIN 2 500 - -
Amo17g0048 512 PANTHER RECEPTOR-LIKE KINASE PLANT 2 500 - -
Amo17g0048 512 Gene3D Transferase(Phosphotransferase) domain 1 265 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0048 Amo-Chr17 590911 594736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0048 19 462 Trihelix Transcription Factor Family AT1G70460 40.798 1.54e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo17g0048 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0048 - - gmx:100778444 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0048 17 590911 594736 Amo17g0048 17 590911 594736 ECH