Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0040 ATGAGTCTTGCTATTGATGCTATTAGAAAAATCTCTCCATGGAAGGAAAGTTGGACTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTACCATTGTTAATGAAAATATGCAGAAACTCTTACACATGGTCTTGATGGATAAGCAGCACCACAAAATCCAAGCAACTATTGAGGATGATTTGATTTCAACTTTTATTGATCGGTTAAAAGAAGGAGAAGTATTCATTATTTCCGACTTCAAAGTGATACCCAATCTTGGATTGGTCAGGTGTAGTACTTCTGTTGTTGCTGCTGCAAGTACAGTCATACCCAACCCTGGTTTAAGTGTAACTTCTATGGACCAGATTCTTCAGAAGTGCATTGATTATGAGTACTTAATAGATTTTATTGGGGTGCTTTGTGGATTGAAAAAGAGAAGGGATGTTGAGTGTAATGGAAAGATATTGAAAGTTCTGACCATTGAAGTTTTTGCTGATGGGAAGAAAATCTCCTGCAATTTTGTTGGTGATTGTCCTGCTCTTTTAGACATGAATACTTTGAAAAGGTACCAAAGACCACCTGTTGTAATTCTGCAATCTTTCAAGATCAAAGTCAATGGAGATAAAGTCAGTCTCCAAAATGTGATCAATATTTCCCGAGTTTTGATCAACCCTGATATGCAGGAAACTGTGAATTTTCTGAATCAATATGGTATTGGGAGCCACCATTTCAGTAGACTCTGTAGTAATGAGGTTGGGGATTTGGATGGACAATACTTTGTGGTTGAAAAAATTAAGGAGATTGTTGAAGATCCGGAGTGGTGGTTTTTTTCTTGTGTTTGCGGTCATCCTATTGTAGGTGATGACAATGTGTTCTATTGTCAGCTGTGCAGCAGAGAGATTCAGCATTTTATGATAAGGATTAAGATACTTGTTGAAGACGGTACTTCTTGTGGAATGTTTGTCTTGTTAGACAGCCCAGCCACTAAGCTATTAGGGAGAACGTGTTCTGATGTTTTTTTGTTGTTAGAAGATGAAATCGATAAAATTGAGCACCGATACTGTCCACAGTTTTTTCATAAACTGCTTGGCAAAGAAATTATTTTCAAAGTTCAAGCAAAGAGGATTAGTGCTCATGGTTATTGTGGTACCTTTAAAGTCATCAATGTCATTAGTGATGCACGATTTTTCAACAAACTTCAGGCTGATCAGTGCATCAAGGATGTTAGTTCTGATTCGGCCTTTAGCCCAATATTTGAAGACTTTTCTCGGTATGGACAGCTTAGATGTTATGAGAACCAAGTCATATCTGGTGTTCGAATACAGCTGCATAGCATTAAAGAGATTCTTGCTGACATTCTTTGTGCTAAGATGTATTCTTCTGCATCAAGAAATAAGTGGTGGTACTACTGTTGTCTGTGTAATGCACATGTTTCTCATGTTGGGAATGTATTTTATTGTTATCTGTGTAGAGTTGAGTGTGTTGATGCCATAAGAAGGTATCGGATCAAAATTATTGTTTCCCACTCAAATGGCAGCAATATTTTCATACTTGAGGATGATGAGGTGATGCAAATAGTCAAAAAGAGTTGTTCAGACTTTTTGATAGATGAAAAGAAAAACTCCCAATCAACCGATGAATACACTCTTCCGAATGGGATAATTTCTCAGTTGATGAACAAGAAAATTCTGTTCATAGTGGATCCTAGACCTGTTGGATATGAATTGAACACATCTCTTCACATTGTTCGTGCAGTATGTGATGATCTTGAAATTGTGAAGTTTTTGGAGGACTCTAGCAATGATAATGAACAGCAGAATCCAGTTCAGTTTCACTCCAATGCAAGCATTCAGTGTTCATCGAGCTCAAGTGCTACAGTGGGTCAGGCTTCACCCATTTCTGTTCTCAACTGGAATTGTTGGAATGTTAACCATGATTTTCATGCAAGAATCTCATCCTCACAAGGTTCGAATTTATTTGGGAGTCATCAGCCTCTCACTATTAGGGAAGAGCTTCGGAGTGCTTTTGGACAATGTGAAAATACTGCCGAGGCTGTTGAAAGGATGGATGAGTGTAGTGGCTAA 2067 0.3803 MSLAIDAIRKISPWKESWTIEAKILTIWEDATIVNENMQKLLHMVLMDKQHHKIQATIEDDLISTFIDRLKEGEVFIISDFKVIPNLGLVRCSTSVVAAASTVIPNPGLSVTSMDQILQKCIDYEYLIDFIGVLCGLKKRRDVECNGKILKVLTIEVFADGKKISCNFVGDCPALLDMNTLKRYQRPPVVILQSFKIKVNGDKVSLQNVINISRVLINPDMQETVNFLNQYGIGSHHFSRLCSNEVGDLDGQYFVVEKIKEIVEDPEWWFFSCVCGHPIVGDDNVFYCQLCSREIQHFMIRIKILVEDGTSCGMFVLLDSPATKLLGRTCSDVFLLLEDEIDKIEHRYCPQFFHKLLGKEIIFKVQAKRISAHGYCGTFKVINVISDARFFNKLQADQCIKDVSSDSAFSPIFEDFSRYGQLRCYENQVISGVRIQLHSIKEILADILCAKMYSSASRNKWWYYCCLCNAHVSHVGNVFYCYLCRVECVDAIRRYRIKIIVSHSNGSNIFILEDDEVMQIVKKSCSDFLIDEKKNSQSTDEYTLPNGIISQLMNKKILFIVDPRPVGYELNTSLHIVRAVCDDLEIVKFLEDSSNDNEQQNPVQFHSNASIQCSSSSSATVGQASPISVLNWNCWNVNHDFHARISSSQGSNLFGSHQPLTIREELRSAFGQCENTAEAVERMDECSG* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0040 688 Pfam Domain of unknown function DUF223 44 94 IPR003871 -
Amo17g0040 688 PANTHER REPLICATION FACTOR A 1, RFA1 265 405 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g0040 688 CDD RPA1_DBD_A_like 19 91 - -
Amo17g0040 688 Gene3D - 432 592 IPR012340 -
Amo17g0040 688 Gene3D - 237 387 IPR012340 -
Amo17g0040 688 PANTHER BNAC01G35430D PROTEIN 265 405 - -
Amo17g0040 688 PANTHER BNAC01G35430D PROTEIN 17 98 - -
Amo17g0040 688 SUPERFAMILY Nucleic acid-binding proteins 110 236 IPR012340 -
Amo17g0040 688 SUPERFAMILY Nucleic acid-binding proteins 6 107 IPR012340 -
Amo17g0040 688 Gene3D - 104 236 IPR012340 -
Amo17g0040 688 PANTHER REPLICATION FACTOR A 1, RFA1 17 98 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g0040 688 SUPERFAMILY Nucleic acid-binding proteins 258 369 IPR012340 -
Amo17g0040 688 SUPERFAMILY Nucleic acid-binding proteins 449 561 IPR012340 -
Amo17g0040 688 Gene3D - 4 103 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0040 Amo-Chr17 483282 487599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0040 1 340 Core DNA Replication Machinery Family AT5G08020 22.646 8.39e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0040 - - ahf:112771159 889.026