Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0038 ATGGCTATCTCTGCGATTCGATTCGATTCCACCATGAGGGTGTTCTTCTCTTTGTTGTTTCTGTTCCTTTCTCCCCAGGGTTGCTCTGTCTCTCTCTGTCGAGGATGCCTCATTCTCCATGTCGACTTCTCGGTTTTGGATAGCAAATGTTGTCACCGCAGTTCAAGAGTTCTTTTGTTTATATTTTCTACTTTTGGTGTTCTTATCTTTCAAATTTTGGGAATGAATGACCGTGTTGATCTGGTGGACAAAATCACTCCGTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTCAAGTTGTGGTACCACAAGAATCCTGCTTTGGATTCTTCTCAAAATCTATTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAGGCCACCATTAGAGATCAGCTAATATCAAAATTTGCCTTGTCTCTAAATGAAGGAATTGTGTACTTGATGACCCACTTTACAGTTGTACCCAACACTGGTTTGAACAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACCTCTGTTGTTTCTGTGGTATGTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGCACCACAGTTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGCTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGGAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGCAAGATCTCCCCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTGAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGAATTCGGGTAAAGATTCAGGATGCTAGGTGTACTGTTTTGTTTGTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAAAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTTTGTCGGTCATATTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGTTTTTAAGGTTGAAATTGATTCTGCAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGTCTTTAGTCATAATCAAGAACCAGTTGCAGTCGATGATTATATCAATTATGCAACTGGCGAAGATTACAAGACTCAAGTAGTTTGTGATAATGCTATTCAATCAGAAACTATTGAAGATATTATTACTGATCTTATTTCACCGAATCGCTGTTATTCTGATTCTGAGAACGGTGGTTTTGTTTTTATTCTGGGAACTATATCATCTGTGTTGAAAAATCATAAGTGGTTCTGCTTGAAGGTTGTAGTGTCTCATTCAAATGGGAACAATATTTTTGTTCTTAAAGATCGTGAAGTCGTCCAAATAATAAAGACAAGATGCTCGAGCTTTTTGGATAATCACCCAGAGTTGAGTCAGATGAATCGTTCTGTGTATATTGTTCAACAAATCTGGGATGATGCCTCTGTTATTAATGTTTTTGAGGCTGCTGCTGAGATGAATGACCATAAGATTCATGTTCTGGTTGATTCTATGCCTGAAGTTGAGGATGCTTTCAGCCAATGTGGAAGTGATCATGAGGCCGTGGAGGATCTGCATGCTTTTTAG 2049 0.3856 MAISAIRFDSTMRVFFSLLFLFLSPQGCSVSLCRGCLILHVDFSVLDSKCCHRSSRVLLFIFSTFGVLIFQILGMNDRVDLVDKITPWRESWKVHVKVVKLWYHKNPALDSSQNLLHMVLMDEKLHKIQATIRDQLISKFALSLNEGIVYLMTHFTVVPNTGLNRVTKHRFRLLFQYNTSVVSVVCPRIPHSGLCFASLDEIDQMTKHHSFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYARSPLVVLESFKIKAIEGGVILQNVIDVSRLFINPDIPEAVEFLSRFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDARCTVLFVLLDNAATKLFGKTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKVFKVEIDSAVDPDYSSCFKIVNVFSHNQEPVAVDDYINYATGEDYKTQVVCDNAIQSETIEDIITDLISPNRCYSDSENGGFVFILGTISSVLKNHKWFCLKVVVSHSNGNNIFVLKDREVVQIIKTRCSSFLDNHPELSQMNRSVYIVQQIWDDASVINVFEAAAEMNDHKIHVLVDSMPEVEDAFSQCGSDHEAVEDLHAF* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0038 682 CDD RPA1_DBD_A_like 93 181 - -
Amo17g0038 682 Gene3D - 81 185 IPR012340 -
Amo17g0038 682 SUPERFAMILY Nucleic acid-binding proteins 343 500 IPR012340 -
Amo17g0038 682 Pfam Domain of unknown function DUF223 118 184 IPR003871 -
Amo17g0038 682 SUPERFAMILY Nucleic acid-binding proteins 196 318 IPR012340 -
Amo17g0038 682 CDD RPA1_DBD_B_like 214 316 - -
Amo17g0038 682 SUPERFAMILY Nucleic acid-binding proteins 81 182 IPR012340 -
Amo17g0038 682 Gene3D - 188 322 IPR012340 -
Amo17g0038 682 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 94 446 - -
Amo17g0038 682 Pfam Replication factor-A C terminal domain 365 444 IPR013955 -
Amo17g0038 682 PANTHER REPLICATION FACTOR A 1, RFA1 94 446 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g0038 682 Gene3D - 336 509 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0038 Amo-Chr17 475487 479956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0038 73 442 Core DNA Replication Machinery Family AT5G08020 21.717 1.60e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0038 - - ahf:112695694 1026.16