Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0006 ATGGGAAATTGCTTCATAAAACCAGTTGCTCATGTTTCCTCCACAACCCTTTTTGGGAGTAGTAATAAATCTCAAACTAAGCCAAAGCAGAATTCAAGTCCTCCAAAACAAAAATCTTCTGCTCAAACTTCAGTGTCAAATGCTATTGAGAGAACAATTTCTAGCAGCCTTAAGTCCTTCTCCTTTAGTGATCTGAAGGAGGCAACTAAGAACTTCCGGCGAGAGAATTTGATCGGCGAGGGAGGGTTCGGGTTTGTGTACAAAGGGTGGATAGATGAGAACACTTTTGCTCCCACAAAACCAGGGACTGGTATAGTAGTAGCCATAAAGAAGCTTAAGCCAGAAAGCTTTCAAGGACACCAAGAATGGCTTGCAGAAGTGAACTATCTAGGGCAGCTTCACCATGAAAATCTTGTAAGACTTATTGGTTATTGCTTGGAAGGGAAGAATAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAACCATTTATTCAGAAAAGGTGTTCAACCAATTCCATGGATTATGAGGATCAACATCGCCATAGCTGTTGCTAGAGGATTAGCATTCTTGCATTCCCTCGATTCAAATATCATTTTTCGCGATTTAAAGGCTTCCAATGTCCTACTTGACTCTGATTTCAATGCAAAGATTTCGGATTTTGGCTTGGCAAGAGACGGTCCTACCGGAGATAATACACACGTTTCAACCAGAATTATTGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGCGTTGTCTTGCTAGAGTTATTAACCGGAAGGCGTGTAGTCGAAAACGAGAAAGAAGGAATTCCAGAAGAAACATTGGTGGATTGGGCGAGGCCATTCCTAAGTGATAGCAGAAGGATTTTGAGAATCATGGATACCAGGTTGGGTGGACAGTACTCTAGGAAAGGAGCTCAAGCCGCGGCCGCACTCGCCTTGCAGTGCCTGAATGCTGATCCAAAATATAGGCCACAAATGGTGAATGTTTTAGCTGCATTGGAAGCACTTCAATCCACAAATTCAATCACAAGGACCCCAAAAAGGGCAACTGAGAGTAGTGCAACCAGCAAACATTCTTCTAATCATTCCCAAAAGTCACTTTCAAGTGCTCAAAAACTATGA 1182 0.4239 MGNCFIKPVAHVSSTTLFGSSNKSQTKPKQNSSPPKQKSSAQTSVSNAIERTISSSLKSFSFSDLKEATKNFRRENLIGEGGFGFVYKGWIDENTFAPTKPGTGIVVAIKKLKPESFQGHQEWLAEVNYLGQLHHENLVRLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPIPWIMRINIAIAVARGLAFLHSLDSNIIFRDLKASNVLLDSDFNAKISDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVENEKEGIPEETLVDWARPFLSDSRRILRIMDTRLGGQYSRKGAQAAAALALQCLNADPKYRPQMVNVLAALEALQSTNSITRTPKRATESSATSKHSSNHSQKSLSSAQKL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0006 393 Pfam Protein tyrosine and serine/threonine kinase 75 351 IPR001245 GO:0004672|GO:0006468
Amo17g0006 393 MobiDBLite consensus disorder prediction 361 393 - -
Amo17g0006 393 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0006 393 PANTHER OS01G0588500 PROTEIN-RELATED 19 382 - -
Amo17g0006 393 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Amo17g0006 393 SUPERFAMILY Protein kinase-like (PK-like) 39 353 IPR011009 -
Amo17g0006 393 CDD STKc_IRAK 78 356 - -
Amo17g0006 393 Gene3D Phosphorylase Kinase; domain 1 46 157 - -
Amo17g0006 393 Gene3D Transferase(Phosphotransferase) domain 1 158 382 - -
Amo17g0006 393 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0006 393 PANTHER TYROSINE KINASE FAMILY PROTEIN 19 382 - -
Amo17g0006 393 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0006 Amo-Chr17 124718 128210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0006 32 392 Glycoside Hydrolase AT3G07070 43.164 4.44e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo17g0006 PK_Tyr_Ser-Thr 8.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0006 - - gmx:102664409 597.045