Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4148 ATGAGTAAGCTTCAGAGTGATGCACTGAGAGAAGCAATCATTGGGATAGTGGCTGATTCCAAAGAGAAGAATAGGAAGTTTATGGAGACCATTGAGCTCCAAATTGGACTCAAAAAATATGACCCACAAAAGGATAAGCGTTTCAGCGGTTCTGTAAAGTTGCCACACATCCCAAGGCCCAAGATGAAAATCTACATGCTTGGTGATGCTCAGCATGCTGAAGAGAAAATAGGATTGGATTGGATGGATGTTGAAGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGAAAGTTCCCCACACTTGTTACCCACCAAGAATCCCTCGAGTCTAAAGTCAATGAGACCAAGGCTATGGTGAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTAAGCATGGAGGAAAAGCAAATCTTCCAAAACGTACAACTGAGCGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCCTACCGTGTGTTTTGA 630 0.4206 MSKLQSDALREAIIGIVADSKEKNRKFMETIELQIGLKKYDPQKDKRFSGSVKLPHIPRPKMKIYMLGDAQHAEEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4148 209 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 2 209 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo16g4148 209 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 207 - -
Amo16g4148 209 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 207 - -
Amo16g4148 209 SUPERFAMILY Ribosomal protein L1 22 209 IPR023674 -
Amo16g4148 209 Gene3D - 129 207 - -
Amo16g4148 209 Gene3D - 1 117 - -
Amo16g4148 209 CDD Ribosomal_L1 9 208 IPR028364 -
Amo16g4148 209 Pfam Ribosomal protein L1p/L10e family 22 203 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4148 Amo-Chr16 154152981 154155373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4148 1 209 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 83.796 2.39e-115 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4148 K02865 - gmx:100808580 365.54