Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4135 ATGCCACAGTATCAACCATCTAAAGAAACTTCAAAGCTTGATGCTTTTTTGGGTCTAGATAATAAGGCCCTGTTGAAAGTTGCTGAGAAATTGGAGCTGAAGGTGATGATTGAGGAAATGGAATCTTCAACAAGCATTGATGATGTTCCTGCAGTGTTCATTTGTCCAATTTCACTTGAGCCAATGCAAGAGCCAGTGACACTTTCAACTGGCCAAACCTATGAAAGATCCAACATCGTCAAATGGTTCTCACTTGGCCACAGAACTTGCCCCATAACAATGCAAGAGCTTTGGGATGATGATGATGGTGGTAATTCTCTCACACCAAACAACACTCTCAGCCACTTGATCCTCACTTGGTTCTCTCACAAGTACATAGCCATGAAGAAGAAATTGGAGGATGTTCAAGGTAGGGTTTCCGAACTCTTGGACACACTCAAGAAGGTTAAGGGTCAAGCTAGAGTTAGAGCTCTTAAGGAACTTCACAAACTTGTTGAATCTCATGTTGAAGCAAGGAAATCAGTGCTGGAGAATAATGGGGTTGCTTTGGTTTCTTCACTTTTGGGTCCATTTACTTCACATGCTGTTGGGTCAGAAGCAATTGGGATAATTGTGAATTTTGATTTGAGTTCTGAGTTGAAGAGGGATTTGGTGAATCCAGCTAAGGTGTCATTGTTGGTTGATATCATGAATGAGGGAACAATTGAGACCAAGATGAATTGTGCAAAGTTGATTCAAATTCTGCTGATGGAAGGTAAAAACGACATCCAAAATTATGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGGTTATTGAGGCTAATTAGGGATAAGAAACACCCAAATGGGGTCTTAATTGGTCTCAAATTACTCAAATCTATATGTTCATCATATGAATCAGTTAGAAGCTCAGTGGTAAGCATAGGAACAATTCCTCAATTGATTGAGTTATTACCAAATTGGAACAATGAGTGCTTAGAGATAGCACTCTATGTTCTTGATTTGTTGTCAACAATTCCAGAGGGTATTTTAGCATTGAAGCAATGTCCAAAGATTGTTCCAAATGTGGTGAAGTTGTTGATGAGAGTCTCAGAGAATTGCACACAATTTGCATTGTCAATATTGTTGGCTATTTACAAGATTGCCCCTGAAGAATGTGCATCACAGGCAGTGGAAGCTGGTTTGGCACCAAAGCTGTTGCTAGTGATTCAGAGTGGATGCAATCCAGTGTTGAAGCAGATGTCTTCTGAGTTCTTGAAAATGTGCAGTTTGAATTACTCTGCTAATATCTTGATTTCAAAGTGTATGCTTACCACAACAATACAATGA 1329 0.3943 MPQYQPSKETSKLDAFLGLDNKALLKVAEKLELKVMIEEMESSTSIDDVPAVFICPISLEPMQEPVTLSTGQTYERSNIVKWFSLGHRTCPITMQELWDDDDGGNSLTPNNTLSHLILTWFSHKYIAMKKKLEDVQGRVSELLDTLKKVKGQARVRALKELHKLVESHVEARKSVLENNGVALVSSLLGPFTSHAVGSEAIGIIVNFDLSSELKRDLVNPAKVSLLVDIMNEGTIETKMNCAKLIQILLMEGKNDIQNYEIVSSLSLLVGLLRLIRDKKHPNGVLIGLKLLKSICSSYESVRSSVVSIGTIPQLIELLPNWNNECLEIALYVLDLLSTIPEGILALKQCPKIVPNVVKLLMRVSENCTQFALSILLAIYKIAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSANILISKCMLTTTIQ* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4135 442 SMART Ubox_2 52 120 IPR003613 GO:0004842|GO:0016567
Amo16g4135 442 Pfam U-box domain 49 124 IPR003613 GO:0004842|GO:0016567
Amo16g4135 442 Gene3D - 132 433 IPR011989 -
Amo16g4135 442 SUPERFAMILY ARM repeat 139 424 IPR016024 -
Amo16g4135 442 PANTHER WDSAM1 PROTEIN 23 441 IPR045185 GO:0061630
Amo16g4135 442 ProSiteProfiles U-box domain profile. 48 127 IPR003613 GO:0004842|GO:0016567
Amo16g4135 442 CDD RING-Ubox_PUB 53 95 IPR045210 -
Amo16g4135 442 Coils Coil 132 152 - -
Amo16g4135 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 23 441 - -
Amo16g4135 442 SUPERFAMILY RING/U-box 41 122 - -
Amo16g4135 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4135 Amo-Chr16 153970291 153971619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4135 1 442 U-box Gene Family AT3G49810 56.833 1.57e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4135 - - gmx:100803878 600.127