Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4131 ATGATCCACAGAAGGAAAGCGTTCAGTGGTTCTGTAAAGTTGCCACACATCCCAAGGCCCAAGATGAAAATCTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCTGAGAAAATAGGATTGGATTGGATGGATGTTGAAGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTTCCCACACTTGTTACCCACCAAGAATCTCTCGAGTCAAAAGTTAACGAGACAAAGGCTATGGTCAAGTTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTTGGCAATGTTAGTATGGAGGAAAAGCAAATCTTTCAAAACGTACAACTGAGTGTTAACTTCCTTGTTTCCCTGTTGAAAAAGAACTGGCAGAACGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCTTACCGTGTGTTTTGA 531 0.4237 MIHRRKAFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4131 176 SUPERFAMILY Ribosomal protein L1 5 176 IPR023674 -
Amo16g4131 176 ProSitePatterns Ribosomal protein L1 signature. 76 95 IPR023673 -
Amo16g4131 176 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 5 174 - -
Amo16g4131 176 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5 174 - -
Amo16g4131 176 CDD Ribosomal_L1 3 175 IPR028364 -
Amo16g4131 176 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 2 176 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo16g4131 176 Pfam Ribosomal protein L1p/L10e family 3 170 IPR028364 -
Amo16g4131 176 Gene3D - 4 171 - -
Amo16g4131 176 Gene3D - 25 114 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4131 Amo-Chr16 153923885 153926271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4131 3 176 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 90.230 1.60e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4131 K02865 - gmx:100808580 315.079