Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4106 ATGAACTTTGATCATGGTGTCTCCAACACAAGCCTTCAACTTGGTCTTGCTCTTGGAATTGGCTTCCATCATCAAGAGAAGAATTGCATGAAGAAAAAGGAGGATGATCCATCAAGAAAATGCAATAATAAGGCATACCCATCTCTTACATTAGGACCAGCAATAATTGATGATGATAATCATAATAATCAAGCTTCAAAGATTATTGAAGACTCTAATTCTTCTCCAAGTGCAGTGTCATCGTTTTCCAACTCTTCTATCATAATCAAGAAGGAGAAAGATCAATTCTTGGTTGAAGAATTTGAGGTTGAGATTGATGAGAAGGCTCCATCATCATCAAGGGATGAAGATGGTAACAACACAAAAAGGAAGAAACTTAGGCTCTCAAAAGAACAATCTATAATCTTGGAGGAAAGCTTCAAGAACTATTCTAATCCCAATCCGAAGCAAAAGCAAGAATTGGCAACACACTTGCATCTGCTGCCGAGACAAGTGGAGGACAAAGCTGAAACAAACAGAATCAGATTGTGA 531 0.3785 MNFDHGVSNTSLQLGLALGIGFHHQEKNCMKKKEDDPSRKCNNKAYPSLTLGPAIIDDDNHNNQASKIIEDSNSSPSAVSSFSNSSIIIKKEKDQFLVEEFEVEIDEKAPSSSRDEDGNNTKRKKLRLSKEQSIILEESFKNYSNPNPKQKQELATHLHLLPRQVEDKAETNRIRL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4106 176 Gene3D - 99 167 - -
Amo16g4106 176 MobiDBLite consensus disorder prediction 105 128 - -
Amo16g4106 176 Pfam Homeodomain 122 165 IPR001356 GO:0003677
Amo16g4106 176 PANTHER - 11 171 - -
Amo16g4106 176 CDD homeodomain 122 165 IPR001356 GO:0003677
Amo16g4106 176 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 11 171 - -
Amo16g4106 176 ProSiteProfiles 'Homeobox' domain profile. 119 176 IPR001356 GO:0003677
Amo16g4106 176 MobiDBLite consensus disorder prediction 51 84 - -
Amo16g4106 176 SUPERFAMILY Homeodomain-like 110 165 IPR009057 -
Amo16g4106 176 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4106 Amo-Chr16 153556219 153558985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4106 113 175 Homeobox Transcription Factor Family AT4G16780 61.905 1.10e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo16g4106 Homeodomain 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4106 K09338 - gmx:100797650 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4106 16 153556219 153558985 Amo16g4106 16 153556219 153558985 ECH