Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4105 ATGCATCATCCCCACCATAGCCAGCAACACCATCATCATCATCAACAAGGACGGAATTACAACCAAACCTCCAATAATGGTGGTGGTGAAGTTGATGCCATCAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTCGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGGTATAGGTTATTCAGATGAGAAATGTGAAGGAGAAGGAGGTGGTTCATCGGAAGAGGAACAAGAGGGAGATACAGAAGTAGCAGAGATTGATCCAAGAGCTGAAGACCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCTCCAAGAAGAAGAAGAAAGGAAAACTCCCTAAGGATGCTAGGCAGAAGCTCCTTAACTGGTGGGAACTTCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCACTGGCAGAATCAACAGGTTTGGACCAAAAACAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATGCTCATCAGAAAGCAACCCTCTATATGGATCCTCATTATTTGCCTGATCCTCACTACCGTCTAGCTCCATGA 900 0.4444 MHHPHHSQQHHHHHQQGRNYNQTSNNGGGEVDAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESSNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFQGIGYSDEKCEGEGGGSSEEEQEGDTEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHQKATLYMDPHYLPDPHYRLAP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4105 299 SMART HOX_1 202 267 IPR001356 GO:0003677
Amo16g4105 299 Pfam KNOX1 domain 33 75 IPR005540 GO:0003677|GO:0005634
Amo16g4105 299 MobiDBLite consensus disorder prediction 150 177 - -
Amo16g4105 299 SUPERFAMILY Homeodomain-like 201 275 IPR009057 -
Amo16g4105 299 Pfam KNOX2 domain 89 134 IPR005541 GO:0003677|GO:0005634
Amo16g4105 299 Pfam ELK domain 180 201 IPR005539 GO:0003677
Amo16g4105 299 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981|GO:0006355
Amo16g4105 299 ProSiteProfiles 'Homeobox' domain profile. 200 263 IPR001356 GO:0003677
Amo16g4105 299 CDD homeodomain 212 264 IPR001356 GO:0003677
Amo16g4105 299 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 291 - -
Amo16g4105 299 SMART KNOX2_2 84 135 IPR005541 GO:0003677|GO:0005634
Amo16g4105 299 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Amo16g4105 299 ProSiteProfiles ELK domain profile. 180 200 IPR005539 GO:0003677
Amo16g4105 299 SMART ELK_2 180 201 IPR005539 GO:0003677
Amo16g4105 299 Pfam Homeobox KN domain 220 259 IPR008422 GO:0003677|GO:0006355
Amo16g4105 299 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g4105 299 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 6 291 - -
Amo16g4105 299 MobiDBLite consensus disorder prediction 1 29 - -
Amo16g4105 299 Gene3D - 205 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4105 Amo-Chr16 153537306 153545744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4105 29 299 Homeobox Transcription Factor Family AT4G08150 74.545 2.83e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo16g4105 KNOX2 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4105 - - gmx:100800822 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4105 16 153537306 153545744 Amo16g4105 16 153537306 153545744 ECH