Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4100 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAGAGGACCATGGTCTCCTGATGAGGATGCAACACTCAAGAACTATCTTCACACTCATGGCACTGGAGGAAATTGGATTGCATTACCAAGAAAAGCTGGTCTAAGGAGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTAAGGCCAGATATAAAACATGGAGGATTTACTGAACAAGAGGATCAAATCATTTGCACTCTCTATACTCAAATGGGAAGCAGGCAAGTCTATCTATAG 282 0.4326 MGRAPCCDKANVKRGPWSPDEDATLKNYLHTHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEQEDQIICTLYTQMGSRQVYL* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4100 93 PANTHER OS09G0431300 PROTEIN 1 89 - -
Amo16g4100 93 PANTHER OS09G0431300 PROTEIN 1 89 - -
Amo16g4100 93 Gene3D - 6 68 - -
Amo16g4100 93 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo16g4100 93 CDD SANT 16 62 IPR001005 -
Amo16g4100 93 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo16g4100 93 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Amo16g4100 93 SUPERFAMILY Homeodomain-like 15 91 IPR009057 -
Amo16g4100 93 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4100 Amo-Chr16 153464012 153464969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4100 1 89 MYB Transcription Factor Family AT5G65790 79.775 1.23e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo16g4100 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4100 K09422 - gmx:100789985 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4100 16 153464012 153464969 Amo16g4100 16 153464012 153464969 ECH