Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4085 ATGGGTATCTGTATATCCATTGCATCTTCTGAGATTCATGGGGCCCCTAAAGAAGTTTATGATGAGAGTGTAATAACATTTGAAGCAAACAAGGTTGTAAGTGGTAATCAAGAATTTTGTTCTGCTTACTCTAAACAAGGGACCAAAGGACCCAACCAAGATGCTGCTTCTATTTACCAGGGTTATGGAATGGAAGATGGAATATTTTGTGGTGTTTTTGACGGGCATGGAAGGAATGGACGCATGGTGAGCAACATGGTTAACAGAAACTTATTTTCACTCATACTTGCCCAAAAGAATGCCTTTGAAAGGATTAATAACATAGAAAATGGTGATTCCAACACCCTAAACGACCATGTTGACGCAGTCGAAGGTGACAATCATAAGGATCCAAAGAATTTTCAGATATGGAAAGAAGCACTTACAAGTGCTTTCAAGGTCATGGACAAGGAGATCAAGTTGCAAGAGAATCTAGATTGTTCTTGCAGTGGAACAACTGCTATTGTTGTCGTAAAACAGGGTGAAGGTCTTATCATAGCTAATTTGGGTGACTCAAGGGCAGTGTTGGGGACAATCTGTGAAGCAGAAAGAATAAGGAGGTGCAATGGTTGTGTATATGCATTAAAGGAAGAACCACATATCCAAAGAGTGTGGATACCAAACTATGAGAACTCACCGGGACTTGCCATGTCTCGTTCTTTTGGAGATTTCTTGCTCAAAGAACATGGTGTCATTGCCATCCCTGATGTTTCATATTACCCTCTAACATCATCTGACCAATTCCTTGTTCTTGCAAGTGATGGTGTGTGGGATGTACTAAGCAACATAGAGGTTGCAGCAATAGTGTGGACCACAAAGAGTGAAGAGGAAGCAGCAAAGAAAGTGGTGGAAGCAGCCAATGCTGCATGGAGAAGGAAGTACCCTTTTTCCAAGATTGATGACTGCACTGTGGTTTGCCTCTTCCTAAAAAACGAAAACAAAAGAAACTCAGGAATGTGGAAAGTGTAA 1008 0.4107 MGICISIASSEIHGAPKEVYDESVITFEANKVVSGNQEFCSAYSKQGTKGPNQDAASIYQGYGMEDGIFCGVFDGHGRNGRMVSNMVNRNLFSLILAQKNAFERINNIENGDSNTLNDHVDAVEGDNHKDPKNFQIWKEALTSAFKVMDKEIKLQENLDCSCSGTTAIVVVKQGEGLIIANLGDSRAVLGTICEAERIRRCNGCVYALKEEPHIQRVWIPNYENSPGLAMSRSFGDFLLKEHGVIAIPDVSYYPLTSSDQFLVLASDGVWDVLSNIEVAAIVWTTKSEEEAAKKVVEAANAAWRRKYPFSKIDDCTVVCLFLKNENKRNSGMWKV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4085 335 SUPERFAMILY PP2C-like 26 324 IPR036457 -
Amo16g4085 335 ProSiteProfiles PPM-type phosphatase domain profile. 39 322 IPR001932 -
Amo16g4085 335 PANTHER ALPHABET, ISOFORM E-RELATED 1 327 - -
Amo16g4085 335 CDD PP2Cc 39 322 IPR001932 -
Amo16g4085 335 Pfam Protein phosphatase 2C 194 301 IPR001932 -
Amo16g4085 335 Pfam Protein phosphatase 2C 115 190 IPR001932 -
Amo16g4085 335 Gene3D - 23 325 IPR036457 -
Amo16g4085 335 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 327 - -
Amo16g4085 335 SMART PP2C_4 30 320 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4085 Amo-Chr16 153318921 153322431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4085 1 327 PP2C-type Phosphatase Gene Family AT5G26010 45.326 4.12e-87 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4085 - - aip:107605550 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4085 16 153318921 153322431 Amo16g4085 16 153318921 153322431 ECH
Amo16g4085 16 153318921 153322431 Amo08g0895 08 15275190 15276929 PCT
Amo16g4085 16 153318921 153322431 Amo17g2935 17 131560374 131562631 PCT
Amo08g0895 08 15275190 15276929 Amo16g4085 16 153318921 153322431 PCT
Amo17g2935 17 131560374 131562631 Amo16g4085 16 153318921 153322431 PCT