Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4072 ATGGTTTTTTTGATTAAGCATGCTGTTGTTGTGAAAGTTATTGGCCGTACTGGATCCAGAGGTCAGGTGACTCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTCACATTATGAGGAATGTGAAGGGACCAGTTAGAGAAGGTGATGTTCTCACCCTGCTTGAATCTGAAAGAGAAGCAAGGAGGTTGCGTTGA 198 0.4394 MVFLIKHAVVVKVIGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4072 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4072 65 Gene3D - 3 65 IPR012340 -
Amo16g4072 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Amo16g4072 65 PANTHER 40S RIBOSOMAL PROTEIN S28 4 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4072 65 Pfam Ribosomal protein S28e 5 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4072 65 SUPERFAMILY Nucleic acid-binding proteins 5 65 IPR012340 -
Amo16g4072 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4072 65 PANTHER 40S RIBOSOMAL PROTEIN S28 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4072 Amo-Chr16 153170644 153170841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4072 5 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 88.525 1.24e-32 105