Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4071 ATGGATTCTGGGATTAAGCATGCTGTTGTTGTGAAAGTTATTGGCCGTACTGGATCCAGAGGTCAGGTGACTCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTCACATTATGAGGAATGTGAAGGGACCAGTTAGAGAAGGTGATGTTCTCACCCTGCTTGAATCTGAAAGAGAAGCAAGGAGGTTGCGTTGA 198 0.4545 MDSGIKHAVVVKVIGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4071 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4071 65 Pfam Ribosomal protein S28e 5 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4071 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Amo16g4071 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Amo16g4071 65 Gene3D - 1 65 IPR012340 -
Amo16g4071 65 SUPERFAMILY Nucleic acid-binding proteins 3 65 IPR012340 -
Amo16g4071 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo16g4071 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4071 Amo-Chr16 153157166 153158115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4071 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 9.65e-35 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4071 K02979 - egr:104443388 98.2117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4071 16 153157166 153158115 Amo16g4071 16 153157166 153158115 ECH