Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4039 ATGGCATACCAAGCGATTCAGGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAGTTATTGAACTCTCCTTTCGGTGACACCACATACACCAAGGTTTTCGTCGGAGGGCTGGCATGGGAGACTCAAAGTGAAACCATGCGCCGCCACTTCGAGCAATTTGGTGAAATTCTTGAGGCGGTAGTCATCACTGACAAGAACACCGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCGTGTGCTGATCCAACTCCAATCATTGATGGTAGAAGAGCTAATTGTAACTTGGCTTCACTCGGTCGACCACGCCCTCCGCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTTTGGGAAGTTTCGGCTACCAGCAACCAGTTTCATACGGCTATCAACAGGGGTTGGTTTATCCACCTTATGGGTATACAACGTATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAGCAGTACCTTCAGATATATGGAGTGCCTGGTGCAGTAAACACAACCATTTATCCCTCCTATGGACAAGTGGGTCAGGCTATGCCTAGTGGACATGGGTATACAGCAATGCAAGGCTATACAATACAAGGCCATCAGATCGTGCCATATGGTGGATCTAATGTTAATGCGATGTCAACTTCACCTATGCCTGCCATTCAAACACCATATCCTAGTGGAATCGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCACAGTTTATGCAAGGCAGTGGTCCTGACCAAACCGCTGGCAGGACTAGAGCAGTGGAACTGCTACTTGAGTGGCGGACTTCCAATCTAGCCTTGCAACTCATGATCGACAACTATTTTTCCCCTTTCACTGTTCTCACAATGCATGGCATGATTGTCTATTTTTTGGGTCAAGTCATATATAGTCATGCTCACCAGGTTGTGTATAAGTTGGCTCCAGATGGCAAAGGAAACTGGAATCTGCGGGCTGCTTCTTTTCCATTTGGATGTTTACACTAG 1095 0.4813 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFLGSFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQQYLQIYGVPGAVNTTIYPSYGQVGQAMPSGHGYTAMQGYTIQGHQIVPYGGSNVNAMSTSPMPAIQTPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAGRTRAVELLLEWRTSNLALQLMIDNYFSPFTVLTMHGMIVYFLGQVIYSHAHQVVYKLAPDGKGNWNLRAASFPFGCLH* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4039 364 Gene3D - 4 116 IPR012677 -
Amo16g4039 364 PANTHER BOULE-RELATED 1 283 IPR037366 GO:0003729
Amo16g4039 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Amo16g4039 364 SUPERFAMILY RNA-binding domain, RBD 12 121 IPR035979 GO:0003676
Amo16g4039 364 CDD RRM_RBM24_RBM38_like 32 107 - -
Amo16g4039 364 SMART rrm1_1 33 105 IPR000504 GO:0003723
Amo16g4039 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Amo16g4039 364 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4039 Amo-Chr16 152608733 152612030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4039 21 215 C2H2 Transcription Factor Family AT2G19380 31.068 1.09e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4039 - - aprc:113864528 572.778