Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4018 ATGGAAGGAGCAGTTAGAGTGAAGGAAGAAGAATCGGAACACTCACAACCTCAACCTCGGGAAGGGTTGAACGACGCGTCTCCACCTCCGTTTCTAACGAAGACGTTCGACATGGTGGATGACTCTTCCATTGACTCCATTGTTTCTTGGAGCATTACTCGCAACTCCTTTGTTGTTTGGGACCCTCACAGCTTCTCCACTACCATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGATTTCGGAAAGTTGATCCTGATCGGTGGGAATTCGCTAACGAAGGTTTCTTGGCGGGACAGAAACACTTGTTGAAGACCATAAAGAGAAGAAGAAATGTATCTCAGGGAACACAGCAAAGAGGAGGTGGAGGTCCTTGTCTCGAGTTGGGGGAGTATGGATTGGAAGGTGAGGTTGAAAGGTTGAGGAGAGACCGGAATGTGTTGATGGCCGAAATCGTGAAGTTGAGGCAGCAACAGCATAATTCACGAAATGAGGTGCTTCTGATGGAGACAAGGTTGCAAGCCACAGAGAAGAAACAACATCAGATGATGACTTTCCTTGCCAAAGCTCTGAACAATCCATCTTTCATGCAGCATTTGGCTGATAAGAATTCCCAGAACATGCAATTGTTTGGCGTTGAAGTTAAAAGGAAGAGGAGACTAACAGCTAGCCCAAACGTGGATCCGGTGACAGCAGTAGCAGCAGTGCCTATTGAATCAGTAGTGGAGGACTATCAGAACCACGAACAAGAACTTGCAAATATCGAGTTCGAGATGGATACATTTTTTGCAACATCTTATGATACCGAGCCTAACGACGAAAATAATGACCCTGCATCAACAACTTCGGTATCCGGGGATACTATCTTGGAGGATTTTCTCAAGGAAGATTTGGTAACTGGGAACCCAAAGGATGAAGTTGTGATTGGTGATTGTTCAATTACTGATATTCCTGTGGAGGATTTGGCAGCGACGCCTAAGGATTGGACTGAGGAGTTGCAGGACCTTGTGAATCATATGGAATATCTTGGTTCCAAACCTTAG 1074 0.4572 MEGAVRVKEEESEHSQPQPREGLNDASPPPFLTKTFDMVDDSSIDSIVSWSITRNSFVVWDPHSFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVSQGTQQRGGGGPCLELGEYGLEGEVERLRRDRNVLMAEIVKLRQQQHNSRNEVLLMETRLQATEKKQHQMMTFLAKALNNPSFMQHLADKNSQNMQLFGVEVKRKRRLTASPNVDPVTAVAAVPIESVVEDYQNHEQELANIEFEMDTFFATSYDTEPNDENNDPASTTSVSGDTILEDFLKEDLVTGNPKDEVVIGDCSITDIPVEDLAATPKDWTEELQDLVNHMEYLGSKP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4018 357 Coils Coil 248 268 - -
Amo16g4018 357 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 MobiDBLite consensus disorder prediction 1 30 - -
Amo16g4018 357 Coils Coil 148 168 - -
Amo16g4018 357 Gene3D - 23 121 IPR036388 -
Amo16g4018 357 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 317 IPR027725 -
Amo16g4018 357 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo16g4018 357 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g4018 357 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
Amo16g4018 357 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 11 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4018 Amo-Chr16 152328889 152331129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4018 17 357 HSF AT2G26150 52.478 5.45e-126 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo16g4018 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4018 K09419 - gmx:100778558 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4018 16 152328889 152331129 Amo16g4018 16 152328889 152331129 ECH
Amo16g4018 16 152328889 152331129 Amo17g2912 17 131291984 131294301 PCT
Amo17g2912 17 131291984 131294301 Amo16g4018 16 152328889 152331129 PCT