Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4006 TTGATAGCAGAAGTGGTTGCAGATAGAGCAACATTGTTGGAGATAAAGAAGTCATTTAGGGATGTGGATAATGTTCTATATGACTGGACAGATTCACCTTCTTCAGATTATTGTGTTTGGAGAGGGATAACTTGTGATAATGTCACCTTCAATGTTGTTGCACTAAATCTTTCAGGACTGAATCTTGATGGTGAAATGTCACCAGCAATAGGGAACCTTAAGAGCTTGGTCACCATTGATCTCAAAGAAAACAGATTATCAGGGCAGATACCAGATGAGATTGGTGACTGTTCATCTTTACAAAGCTTGGACCTCTCATTCAATGAGATCAGAGGAGATATACCATTTTCAATATCAAAGTTGAAACAACTGGAAAATTTGGTTTTGAAGAATAACCAGTTGATTGGTCCAATCCCTTCAACTTTGTCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTAAGTGGCGAAATACCAAGACTTATATACTGGAATGAAGTTTTGCAGTATCTCGGCTTGCGAGGTAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAATTAACTGGATTGTGGTATTTTGATGTTAGAAACAATAGCTTGACAGGAAGCATTCCTGAAAGCATAGGAAACTGTACTTCATTCCAAGTCTTGGACATATCCTACAACAAAATCACTGGAGAGATACCATTCAACATTGGATTTCTTCAAGTAGCTACCTTGTCACTTCAAGGGAATAAACTCTCCGGCCATATTCCGTCGGTGATCGGTCTCATGCAAGCACTCGCCGTCTTAGATCTGAGTTGTAACATGTTAAGTGGATCAATCCCTCCTATCTTAGGAAACCTGACATACACAGAAAAATTGTATTTGCATGGAAACAAGCTCACAGGCTTCATCCCCCCGGAGCTAGGGAACATGACAAAGCTTCACTATTTGGAACTGAATGATAACCATTTAAGTGGGCGCATCCCACCCGAACTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTTGCCAACAACAATCTAGAGGGGCCAATTCCGGATAACCTTGGTTCATGTAAAAGCCTTAACAGCCTCAATGTGCATGGGAACAAGTTGACTGGAACAATTCCCGGGGCGCTGAAGAGCTTGGAGAGTATGACTTATTTAAACCTTTCTTCCAACAATCTTCAAGGGCCTATTCCAATCGAGCTATCACGGATTGGTAATTTGGATACATTGGATATTTCAAATAATAATATAATTGGCTCCATTCCTTCTTCCCTCGGTGACTTGGAACATCTTCTAAAGCTGAACCTGAGCAGAAATCATATAACAGGATTTATTCCAGCAGAATTTGCTAATCTTAGAAGTGTTATGGACATTGATTTGTCAAATAATCAACTCTCTGGCTTGATTCCTCAAGAACTTAGTCAGCTTCAGAACATGGTGTCATTGAGGCTACAAAACAACAAATTATCCGGGGATGTGACGTCGCTTGTAAATTGCCTTAGTCTCTCGCTGCTTAATGTATCGTATAACAAACTAGTTGGTGTTATTCCCACAAGCAATAACTTTTCAAGGTTCCCTCCTGACAGTTTCATTGGAAACCCTGATCTTTGTGGCAATTGGTTGAATTCACCTTGTCATGTTAATCACCCTACGGAGCGAGCAACATTATCTAAGGCAGCTATTCTAGGAATTGCTCTTGGTGGCCTTGTAATCCTCCTTATGATATTGCTCGCAGCATGCCGGCCATACAATCCATCTCCTTTTCCGGATGGATCACTCGACAAACCAGTTAGTTTCTCTCCTCCGAAACTAGTGATTCTTCATATGAATATGGCGCTTCATGTGTATGAGGATATCATGAGGATGACTGAAAACCTGAGCGAGAAGTACATTATTGGATATGGTGCATCAAGCACAGTCTACAAATGTGTTCTCAAAAATTGCAAGCCAGTGGCTATCAAGAGGCTCTATTCTCACTATCCACAATGCTTGAAAGAATTTGAGACCGAACTCGAGACTGTCGGAAGCATTAAGCACCGGAATCTTGTTAGTCTCCAAGGATACTCTTTATCCCCATATGGGCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGGGCTAGTAAGAAGAAGAAGCTCGACTGGGATATGCGTCTGAAGATAGCGCTTGGAGCAGCACAAGGGCTCGCCTATCTACATCATGATTGTAGTCCTCGGATCATACACAGGGATGTGAAATCATCAAACATTTTGCTGGATGGAGACTTTGAGCCCCATCTCACTGATTTTGGCATAGCCAAAGTTCTTTGCCCCACAAAGTCGCATACTTCGACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACCTCCCGGCTCACCGAGAAATCCGATGTGTATAGCTATGGTATTGTGTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCATCATCTGATTTTGTCCAAGACAGCAAACAATGCAGTGATGGAAACTGTTGATCCAGACATCACTGCCACATGCAATGACCTTGGAGCAGTGAAGAAGGTCTATCAGCTTGCTCTATTATGCACAAAGCGGCAACCATCGGATCGGCCAACGATGCACGAAGTGACACGTGTCCTCGGCAGCCTCATGCCGTCCACCACCACGGACGCCACCACCATTTCATCAAAACAACAAGAAGGAACTCTTCCACCACCTTCACTACCATGTGCAAAAGTTCCAGCATCATGCTACATTGATGAATATGCAAACCTCAAGACACCACACTTGGTTAATTGCCCTTCAATGAGTACCTCTGATGCACAACTTTTCCTCAAGTTTGGAGAGGTAATCTCCCAAAATAGTGAGTGA 2919 0.4227 LIAEVVADRATLLEIKKSFRDVDNVLYDWTDSPSSDYCVWRGITCDNVTFNVVALNLSGLNLDGEMSPAIGNLKSLVTIDLKENRLSGQIPDEIGDCSSLQSLDLSFNEIRGDIPFSISKLKQLENLVLKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPESIGNCTSFQVLDISYNKITGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGRIPPELGKLTDLFDLNVANNNLEGPIPDNLGSCKSLNSLNVHGNKLTGTIPGALKSLESMTYLNLSSNNLQGPIPIELSRIGNLDTLDISNNNIIGSIPSSLGDLEHLLKLNLSRNHITGFIPAEFANLRSVMDIDLSNNQLSGLIPQELSQLQNMVSLRLQNNKLSGDVTSLVNCLSLSLLNVSYNKLVGVIPTSNNFSRFPPDSFIGNPDLCGNWLNSPCHVNHPTERATLSKAAILGIALGGLVILLMILLAACRPYNPSPFPDGSLDKPVSFSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGASKKKKLDWDMRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDGDFEPHLTDFGIAKVLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPDITATCNDLGAVKKVYQLALLCTKRQPSDRPTMHEVTRVLGSLMPSTTTDATTISSKQQEGTLPPPSLPCAKVPASCYIDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4006 972 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 7 959 - -
Amo16g4006 972 Pfam Leucine rich repeat 342 397 IPR001611 GO:0005515
Amo16g4006 972 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Amo16g4006 972 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Amo16g4006 972 Gene3D Ribonuclease Inhibitor 329 423 IPR032675 -
Amo16g4006 972 Gene3D Ribonuclease Inhibitor 5 170 IPR032675 -
Amo16g4006 972 ProSiteProfiles Leucine-rich repeat profile. 99 122 IPR001611 GO:0005515
Amo16g4006 972 Gene3D Ribonuclease Inhibitor 243 328 IPR032675 -
Amo16g4006 972 Gene3D Ribonuclease Inhibitor 424 551 IPR032675 -
Amo16g4006 972 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Amo16g4006 972 MobiDBLite consensus disorder prediction 903 919 - -
Amo16g4006 972 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Amo16g4006 972 Gene3D Ribonuclease Inhibitor 171 242 IPR032675 -
Amo16g4006 972 MobiDBLite consensus disorder prediction 903 922 - -
Amo16g4006 972 Pfam Protein kinase domain 633 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4006 972 SUPERFAMILY Protein kinase-like (PK-like) 608 896 IPR011009 -
Amo16g4006 972 Gene3D Transferase(Phosphotransferase) domain 1 706 917 - -
Amo16g4006 972 Pfam Leucine Rich repeat 216 233 IPR001611 GO:0005515
Amo16g4006 972 SMART serkin_6 630 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4006 972 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 959 - -
Amo16g4006 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Amo16g4006 972 SUPERFAMILY L domain-like 235 541 - -
Amo16g4006 972 SUPERFAMILY L domain-like 7 241 - -
Amo16g4006 972 Gene3D Phosphorylase Kinase; domain 1 604 705 - -
Amo16g4006 972 ProSiteProfiles Protein kinase domain profile. 630 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4006 972 CDD STKc_IRAK 636 899 - -
Amo16g4006 972 SMART LRR_typ_2 312 336 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 145 169 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 73 97 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 384 408 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 264 288 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 193 217 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 432 455 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 456 479 IPR003591 -
Amo16g4006 972 SMART LRR_typ_2 480 507 IPR003591 -
Amo16g4006 972 Pfam Leucine rich repeat N-terminal domain 8 46 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4006 Amo-Chr16 152148567 152155910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4006 75 917 Receptor kinase-like Gene Family AT5G07180 67.180 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Amo16g4006 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4006 K20718 - gmx:100782307 1703.72