Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3999 ATGAGCTTGAAGAAGAGCCCTCAAATTCGTGAGAAAGAGAAAGGAGCATTATCCCCTAGGGAATCACCATTATCATCATCATCCAAGGCAAGTTCTTCAATAAGGGACAATAATAAAAAGAAGTATGTAGAGCCACCAAGCCCTGCTTTACCTTCTGGAAGCACCGCAGACATATACAAGGGAAGATGGCGAGGATTTCAAGTGGCAGTGAAATGCATATCGCCAGAGTTCTTCCACACAAACCAAAACGGCGTCGTTTTCTTCGTTCAAGAACTCGAAACCCTCTCCAAACAACGCCATAGATTTGTTCTTCAGCTAATGGGTGCGTGCTTGGACCCTCCCCAACAAGCATGGATTGTAACCGAGTACTTAACCACGAATCTAAAAGAGTATCTGCATGGGCCTGGCAATACAAGAAGCAAAGAGAGAGTGGTGCCACTCTCACCCTTTAGAGAGAGGATTGTCATGGCATTGGAGATTGCACAAGCCATGCAATATTTGCATCGCCAGAACCCTAAGATTATTCACCGAACATATGTGTACATGGCACCAGAGGTGATCCGATGTGAACCTTACAATGAAAAATGTGATGTATACAGTTTTGGAATCATACTCAATGAGCTTCTAACTGGAAACCATCCATACATTGAGACAGAATATGGTCCCACCAAGATTGCAATGGGAGTTGTGGAGGGTAAGCTGAGGCCAATGCTTCCATGTGATGATGATTCTAACCTAATGGAAGACCTAATTGACCTTATTAACCTTTGCTGGCATGCAAACCCATCAACAAGACCATCTTTTGAAGCTATCACACGTACCCTTGAAATTTATGTGAAGAAGCTCTATCAAACTATATCAACTCTTTAA 870 0.4299 MSLKKSPQIREKEKGALSPRESPLSSSSKASSSIRDNNKKKYVEPPSPALPSGSTADIYKGRWRGFQVAVKCISPEFFHTNQNGVVFFVQELETLSKQRHRFVLQLMGACLDPPQQAWIVTEYLTTNLKEYLHGPGNTRSKERVVPLSPFRERIVMALEIAQAMQYLHRQNPKIIHRTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLTGNHPYIETEYGPTKIAMGVVEGKLRPMLPCDDDSNLMEDLIDLINLCWHANPSTRPSFEAITRTLEIYVKKLYQTISTL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3999 289 Gene3D Phosphorylase Kinase; domain 1 47 125 - -
Amo16g3999 289 Pfam Protein tyrosine and serine/threonine kinase 50 177 IPR001245 GO:0004672|GO:0006468
Amo16g3999 289 Pfam Protein tyrosine and serine/threonine kinase 180 275 IPR001245 GO:0004672|GO:0006468
Amo16g3999 289 Gene3D Transferase(Phosphotransferase) domain 1 178 288 - -
Amo16g3999 289 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g3999 289 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 178 282 - -
Amo16g3999 289 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 177 - -
Amo16g3999 289 Gene3D Transferase(Phosphotransferase) domain 1 126 177 - -
Amo16g3999 289 SUPERFAMILY Protein kinase-like (PK-like) 50 276 IPR011009 -
Amo16g3999 289 MobiDBLite consensus disorder prediction 1 54 - -
Amo16g3999 289 ProSiteProfiles Protein kinase domain profile. 44 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3999 289 PANTHER OS09G0443600 PROTEIN 178 282 - -
Amo16g3999 289 PANTHER OS09G0443600 PROTEIN 51 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3999 Amo-Chr16 152009804 152014470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3999 50 282 MAP Kinase Kinase Kinase AT2G17700 31.734 4.25e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Amo16g3999 PK_Tyr_Ser-Thr 4.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3999 - - gmx:100794498 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3999 16 152009804 152014470 Amo16g3999 16 152009804 152014470 ECH