Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3994 ATGACAGATCAAAAGGATCATCAAATTCCTGAAGCAGAGTCACCACCTGAGAGTGATGACTTGAGCAACAATTGGTCTCTTGAATTATCAGATTACTTGGCCATTGATGATGATACTCAATGGCTTGATGATGAGTCATTTGTTTCTCAGCATAATCTTTATCATCAAAACTATGTTTTCCATCATCAACCACCCATTCAAGTTGAAGGAGCTACTTCCAACTTTGAGGGCTCTTCATCAACAAACATAAGCAGTGGACAAGAGAAGAAGGAAGCTAGACATAGATATGCATTCAAAACAAAATCAGAGGTTGAAGTGTTGGATGATGGATACAAGTGGAGGAAATATGGAAAGAAGATGGTCAAAAATAGCCCCAATCCAAGGAATTATTATAGGTGTTCAGTGGATGGATGTTCAGTGAAAAAGAGAGTAGAGAGGGATAGGGATGATCCAATGTATGTCATAACAACCTATGAAGGCATCCACATTCACCATCCTTCTTCATCTCGCTACTAG 516 0.3915 MTDQKDHQIPEAESPPESDDLSNNWSLELSDYLAIDDDTQWLDDESFVSQHNLYHQNYVFHHQPPIQVEGATSNFEGSSSTNISSGQEKKEARHRYAFKTKSEVEVLDDGYKWRKYGKKMVKNSPNPRNYYRCSVDGCSVKKRVERDRDDPMYVITTYEGIHIHHPSSSRY* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3994 171 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g3994 171 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 165 - -
Amo16g3994 171 Pfam WRKY DNA -binding domain 108 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3994 171 ProSiteProfiles WRKY domain profile. 102 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3994 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 165 IPR044810 GO:0003700
Amo16g3994 171 SMART WRKY_cls 107 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3994 171 SUPERFAMILY WRKY DNA-binding domain 100 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3994 171 Gene3D WRKY domain 94 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3994 Amo-Chr16 151951414 151953475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3994 27 164 WRKY Transcription Factor Family AT5G26170 50.943 1.17e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g3994 WRKY 2.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3994 - - gmx:100819462 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3994 16 151951414 151953475 Amo16g3994 16 151951414 151953475 ECH