Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3960 ATGTTTCACCGCCGGAGCAATTCTCATCAAGATCACGAAAACAGCGAGGTTTATGCCGAATCCAAGGTTAAGGAGCTAAAGGGAGCAATGGGACCGTTATCCGGGCGCAGCTTGAAGTACTGCACAGATGCTTGTTTTAAGAGATATTTGGAAGCTCGGAATTGGAATGTAGACAAGTCCAAGAAGATGTTGGAGGATACACTAAATTGGAGATCAACCTATAAGCCTGAGGAGATTCGCTGGCATGAGGTTGCCGTGGAAGGGGAGACAGGGAAACTGTATAGAGCAAATTTTCATGACAGGCAAGGAAGGACTGTTCTTATCTTGAGACCTGGAATGCAGAACACCAAATCAATGGAGAATCAGATGAAGCACTTGGTGTATCTTTTGGAAAATGCAATGCTTAACCTTCCACCAGGTCAAGAACAAATGGCATGGTTGATAGATTTCACTGGCTGGTCATTGACGAATAGCGTGCCAGTTAAGTTGGCCAGAGACACCATCAACACTCTTCAGAATCACTATCCTGAGAGGCTTGCCATTGCATTTCTTTACAATCCTCCAAGAATTTTTGAAGCTTTTTGGAAGATAGTCAAGTACTTCTTGGATACAAAGACATTTGAGAAAGTGAAGTTTGTGTATCCCAAAAACAAAGATAGTGTGGAACTCATGAAGTCTTATTTTGATGATGAGAATCTTCCAAAAGAATTAGGAGGAAAAAGCACTATGAAGTATAACCATGAAGAGTTCTCAAGATTAATGGTTCAAGATGATTTGAAATGTGCAGCATTTTGGGGTCCTGAATCAGAAGTAGCTCCAGATCCAGATTACAATGAAGCCACCTCCATTTGA 852 0.4167 MFHRRSNSHQDHENSEVYAESKVKELKGAMGPLSGRSLKYCTDACFKRYLEARNWNVDKSKKMLEDTLNWRSTYKPEEIRWHEVAVEGETGKLYRANFHDRQGRTVLILRPGMQNTKSMENQMKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSLTNSVPVKLARDTINTLQNHYPERLAIAFLYNPPRIFEAFWKIVKYFLDTKTFEKVKFVYPKNKDSVELMKSYFDDENLPKELGGKSTMKYNHEEFSRLMVQDDLKCAAFWGPESEVAPDPDYNEATSI* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3960 283 PANTHER GH16843P 5 269 - -
Amo16g3960 283 CDD SEC14 99 240 IPR001251 -
Amo16g3960 283 SMART sec14_4 87 242 IPR001251 -
Amo16g3960 283 Pfam CRAL/TRIO domain 90 239 IPR001251 -
Amo16g3960 283 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Amo16g3960 283 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Amo16g3960 283 Gene3D - 3 264 IPR036865 -
Amo16g3960 283 PANTHER RANDOM SLUG PROTEIN 5-LIKE 5 269 - -
Amo16g3960 283 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Amo16g3960 283 SUPERFAMILY CRAL/TRIO N-terminal domain 20 83 IPR036273 -
Amo16g3960 283 SUPERFAMILY CRAL/TRIO domain 81 256 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3960 Amo-Chr16 151542203 151545106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3960 48 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.404 4.82e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3960 - - gmx:100800854 502.671