Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3946 ATGGCTGAAACCGCCGTCACCGACGCCGATAAAACAATCACCACCACCACATTGCCGTCGCTCAACATCGACGAATTATCGATCGACGAAAACAAGAAACCTCCGAAGCTATTAGACGATCCGGAAGACTCCAATATCCAAGCGGTTAGTTCTGACGACACGCCGTACACCTCGGCGGCGACGTTCGAGGAATTGAACTTGTCGGCGGAGCTTTTGAAAGGACTCTACGTTGAGATGAAGTTCCAGAAACCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCTTGAATCCGCCGCACCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACGTGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGACGCAAGCTACTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGCACTGTGCCGTTCCGACGGATAGCAGGGATTCAATTCCAATTCAAAAAGGGGAGAAAATTAAGGCTCAGGTGGTTATTGGGACTCCTGGCACTATCAAGAAGTGGATTTCATTCAAGAAATTGGAGGTGACCAAATTGACGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAGGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATCCAATTCTAGCTGCCAGGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGACGCTGTCAAGCAATATAAAGTGCAGTGCACTGATGAGTTGTCGAAGATTGAGGTGATAAAAGATTACATATTCGAGTTAGGAGAAAATGTGGGCCAAACCATCATATTCGTGCGCACGAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTCAATATGGGTTACGAGGTGACTTCGATACAAGGTGCTCTTGACCATGAAGAGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCGACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCGGAGTATACACGGGAATTTGAGCCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGTCGATTTGGCCGCAAGGGGGCTGTGTTTAACCTAATACATGATGAAAAAGATGAAAGGCTGATGTCAAAGATCGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGAGAAAAAAGTGTCGAAGACTATAAAGCTGCACTTAAGGAAGCCGGTCTACTACAAGCATAG 1413 0.4473 MAETAVTDADKTITTTTLPSLNIDELSIDENKKPPKLLDDPEDSNIQAVSSDDTPYTSAATFEELNLSAELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSTQATQALCICPTRELAIQNTEVLRKMGKHTGISSHCAVPTDSRDSIPIQKGEKIKAQVVIGTPGTIKKWISFKKLEVTKLTILVFDEADQMLAEDGFKDDSLRIMKEIEKSNSSCQVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDAVKQYKVQCTDELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVNMGYEVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLIHDEKDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3946 470 Gene3D - 38 277 IPR027417 -
Amo16g3946 470 MobiDBLite consensus disorder prediction 29 53 - -
Amo16g3946 470 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 89 IPR014014 GO:0003724
Amo16g3946 470 Pfam DEAD/DEAH box helicase 86 258 IPR011545 GO:0003676|GO:0005524
Amo16g3946 470 PANTHER DEAD-BOX HELICASE DBP80 39 448 - -
Amo16g3946 470 Pfam Helicase conserved C-terminal domain 296 418 IPR001650 -
Amo16g3946 470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 299 459 IPR001650 -
Amo16g3946 470 SMART helicmild6 325 418 IPR001650 -
Amo16g3946 470 SMART ultradead3 80 286 IPR014001 -
Amo16g3946 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 436 IPR027417 -
Amo16g3946 470 Gene3D - 280 462 IPR027417 -
Amo16g3946 470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 270 IPR014001 -
Amo16g3946 470 CDD DEADc_DDX19_DDX25 67 266 - -
Amo16g3946 470 CDD SF2_C_DEAD 283 427 - -
Amo16g3946 470 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3946 Amo-Chr16 151377711 151380681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3946 26 450 Eukaryotic Initiation Factors Gene Family AT1G72730 35.402 5.11e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3946 K18655 - gmx:100778091 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3946 16 151377711 151380681 Amo16g3946 16 151377711 151380681 ECH