Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3938 ATGTACAATTATAAATTGAAGTCCCTTTGGCCCTCAATTTTTCATTCTCATTATTATCACTTCAACACTCTTCTTTGCTTCACTTTCCTTCCCCTTCCTATTTCTCTGTACTACTTTTCTGTCAAAGCCATGGCCCTAACCTCATTAAGCTCAAAGTCTTGTGCAACCTTCTGGCTTTTCCTCCTCTTAGGTAATGTAGCATCAGCTACATTGTTTACCCTACATAACAATTGCAAATACACTGTTTGGCCTGGAACACTTTCCGGCAATGACCCGACCATTCTTGACACCGGTCTTTCTCTAACATCCGGTTCTTTGGTCCAGATGACCGCCCCAGTTGGCTGGTCAGGACGATTCTGGGGTAGAACCGGATGTAACTTTGATATGGCTGGTAATGGCAAATGTGCCACCGGAGATTGTCCCGGTGGACTCAAGTGCACTGGTGGAGGCGTTCCACCAGTGACACTAGTAGAATTCACCATCGGAAGTGCAACCAATGGCAACAAAGATTTTTATGACGTAAGCTTGGTGGATGGTTACAATGTGGCCATTGGAGTACGGGCAACCGGAGGAACCGGTAATTGTCAATACGCAGGTTGCGAAAATGACCTGAATGGTTACTGCCCAAAGGAGTTGCAAGTAAAAGATGATACGGGTTCGGTAGTAGCATGTAAGAGCGCGTGTGTGGCGTTTAACACCCCGGAGTATTGTTGCACCGGGGAGCACTCAACGCCACAAACGTGCTCACCTACGAATTACTCAAAGATGTTTAAGAATGCATGTCCAAGAGCTTATAGTTACGCTTATGATGATGCTTCAAGCACTTTTACATGCTCAGGTAATGTTGCATCAGCCACATTATTCACCCTACGAAACAATTGCAAATACACTGTTTGGCCCGGAAGTCTTTCCGGCAATGGCCCAAATATTCTTGACACCGATCTGTCTCTAAGACCCGGTTCTTCGGCCCAATCAAATGTTTCGGCTGGTTGGTCAGGACGTTTTTGGGCTAGAACCGAGTGCAATTTTGATAGGACCGGTAACGGCAAATGTGCTACCGGAGACTGTCTCGGTGGCCTCAAGTGTATTGGCGGAGGTGCTCCACCGGTAACACTGGCCGAGTTCACGGTTGGAAGTGCCGACAATGGCAATATAGACTTTTATGATGTGAGCTTGGTAGACGGTTACAATGTTCCTATGGGGGTACATGCAACCGGAGGAATCGGTAACTGTCAATATGCTGGCTGCGTTTCTGACCTAAATGATAACTGTCCAAAGGAGTTACAGGTAAAAGATGTTACCGGTTTGGTAGTTGCATGCAAGAGTGCGTGTGCGGCATTCAACAGTCCGGAATATTGTTGCACCGGAGAGCACGGAACACCACAGACATGCCCACCTACAAATTACTCAAAAATGTTTAAGATTGCATGTCCAAGAGCTTATAGTTATGCTTATGATGATGCTTCAAGCACTTGTACATGTTCTGGAGCAAATTACACCATCACTTTTTGTCCCACAGAATCCTCATAA 1530 0.4601 MYNYKLKSLWPSIFHSHYYHFNTLLCFTFLPLPISLYYFSVKAMALTSLSSKSCATFWLFLLLGNVASATLFTLHNNCKYTVWPGTLSGNDPTILDTGLSLTSGSLVQMTAPVGWSGRFWGRTGCNFDMAGNGKCATGDCPGGLKCTGGGVPPVTLVEFTIGSATNGNKDFYDVSLVDGYNVAIGVRATGGTGNCQYAGCENDLNGYCPKELQVKDDTGSVVACKSACVAFNTPEYCCTGEHSTPQTCSPTNYSKMFKNACPRAYSYAYDDASSTFTCSGNVASATLFTLRNNCKYTVWPGSLSGNGPNILDTDLSLRPGSSAQSNVSAGWSGRFWARTECNFDRTGNGKCATGDCLGGLKCIGGGAPPVTLAEFTVGSADNGNIDFYDVSLVDGYNVPMGVHATGGIGNCQYAGCVSDLNDNCPKELQVKDVTGLVVACKSACAAFNSPEYCCTGEHGTPQTCPPTNYSKMFKIACPRAYSYAYDDASSTCTCSGANYTITFCPTESS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3938 509 SUPERFAMILY Osmotin, thaumatin-like protein 287 505 IPR037176 -
Amo16g3938 509 PANTHER OS03G0233200 PROTEIN 57 281 IPR001938 -
Amo16g3938 509 ProSitePatterns Thaumatin family signature. 131 146 IPR017949 -
Amo16g3938 509 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 57 281 - -
Amo16g3938 509 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 283 506 - -
Amo16g3938 509 ProSitePatterns Thaumatin family signature. 347 362 IPR017949 -
Amo16g3938 509 Gene3D Thaumatin 287 505 IPR037176 -
Amo16g3938 509 Gene3D Thaumatin 70 286 IPR037176 -
Amo16g3938 509 PANTHER OS03G0233200 PROTEIN 283 506 IPR001938 -
Amo16g3938 509 SMART tha2 288 505 IPR001938 -
Amo16g3938 509 SMART tha2 72 280 IPR001938 -
Amo16g3938 509 SUPERFAMILY Osmotin, thaumatin-like protein 71 280 IPR037176 -
Amo16g3938 509 CDD TLP-PA 72 281 - -
Amo16g3938 509 ProSiteProfiles Thaumatin family profile. 69 289 IPR001938 -
Amo16g3938 509 CDD TLP-PA 288 504 - -
Amo16g3938 509 Pfam Thaumatin family 76 280 IPR001938 -
Amo16g3938 509 Pfam Thaumatin family 292 505 IPR001938 -
Amo16g3938 509 ProSiteProfiles Thaumatin family profile. 285 505 IPR001938 -
Amo16g3938 509 PRINTS Pathogenesis-related protein signature 334 345 IPR001938 -
Amo16g3938 509 PRINTS Pathogenesis-related protein signature 495 504 IPR001938 -
Amo16g3938 509 PRINTS Pathogenesis-related protein signature 287 299 IPR001938 -
Amo16g3938 509 PRINTS Pathogenesis-related protein signature 347 376 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3938 Amo-Chr16 151268786 151272772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3938 288 509 Receptor kinase-like Gene Family AT5G38280 48.261 1.98e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3938 - - adu:107495975 583.178