Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3930 GCACAACAAAACTACTCAGGAAACTCAATACTAAGATGCAACAATGATGACAAAAAGGGACCTTCACCATCATTCCTCTACACATGCAATAACAATGGCATCAAGGAATCATCAACATGCATGGCATTCTTAATCTTCAAATCTCAACCTCCTTACAACACCATCACCACAATCTCCAACCTCATTTCTTCAAACCCAATAGACCTTGCAAGAATCAATGATGTCACTACTTCACACACAATGTTCCAAATTGGTAAAGAGGTTATTGTCCCTTTGAAATGCTCTTGTTCTTCAATGAAGGACACCAAGTATTACTATTACCAATCCAAAACCAAACATGTCTTGGGTGCAATCTTGCCAGAAACTTTCCAAGGCTTAACCACTTGTGATTCCCTAAAGAGGTTCAATCCTTATCCGGAGCGCGATTTGCGCCCCGGCATGGAGTTGAATGTTCCATTAAGGTGTGCTTGTCCAACATGGAATCAAGAAAGAAATGGCACCAAGTATTTGATGACTTATTCTGTGAATTGGGGTGACACCATTTCTAGCATTGCATCAAGATTCAATGCAACAATACAGAATCTTCTTGAAGCCAATGTGTTTTTTATAGGAAATATATCAGAAAGATTCATCAAGGCAGGCGAAATCCGTAACAAAAATCATGCGATTTCAGAAGATATCCCCGTCGAAATAGCGAGCATTGATGTGAACTATTCTAAATTGTATAAATTCGAGGAAATCAAGGATGCCACCGAAAATTTCAGTTCAAGGAACAGAATCAAAGGTTCTGTATTTCACGGCGAATTCGGTAACAAAAGGGAAAGTTTTGCTGTCAAAAGAAGAATAAGTAAAGGGTATGCTTCAAAAGAAATAAATTTACTTAGAAGAATCAACCATTTCAACTTGATCAAGCTTCAAGGATATTGTGAAAATGAAGATTTGTTCTATCTTGTGTTTAAATTCATGGAAAATGGTTCCTTAAGAGAATGGCTTAGTAGTGAAGAAAACTCTTTTTTGCATAAAAGTTGGTCAAAGAGGATTCAAATTGCTTTGGATATTGCAAATGGACTTCAATATCTTCACAACTTCACATATCCTTGTTATGTTCACAATGATATTAACAGTGGAAACATTCTTCTAAACAAAGATCTAAGGGCAAAGATAGCAAATTTTTCTCTAGCAGAAGAATTATTAGAAAGGAGAATGATAACAAGTTCAAGTTCTTGTCACACTTCAGATGATGTTTATGCCTTTGGAGTGGTACTTTTGGAATTGATCACTAGCAAAGAATGTGTTACACTGCATGGTTTATCAAGAGAAGGAATAACAATGGTTTCTAGGATCATGATGAATAATCTCATTAGTAAGGAGCATGAAGAAGAGAAGTTGAGTTTGTTCTTTGATCCAAGGCTCATTGGAAACATTGAGAGAAAAAGTGCTTTGATGCTAGTTAAGCCAAGTTTAGCTTGCTTGAATCAAGAATCAGAAAGTAGACCAAACATGTCAGAGGTGGTCTCTACCTTGTGGAAAACACTTTCTGAGTCCCATAATAATTGTTGGAGTGAGAAAATTGTCATGTTGAAATGTTAA 1590 0.3642 AQQNYSGNSILRCNNDDKKGPSPSFLYTCNNNGIKESSTCMAFLIFKSQPPYNTITTISNLISSNPIDLARINDVTTSHTMFQIGKEVIVPLKCSCSSMKDTKYYYYQSKTKHVLGAILPETFQGLTTCDSLKRFNPYPERDLRPGMELNVPLRCACPTWNQERNGTKYLMTYSVNWGDTISSIASRFNATIQNLLEANVFFIGNISERFIKAGEIRNKNHAISEDIPVEIASIDVNYSKLYKFEEIKDATENFSSRNRIKGSVFHGEFGNKRESFAVKRRISKGYASKEINLLRRINHFNLIKLQGYCENEDLFYLVFKFMENGSLREWLSSEENSFLHKSWSKRIQIALDIANGLQYLHNFTYPCYVHNDINSGNILLNKDLRAKIANFSLAEELLERRMITSSSSCHTSDDVYAFGVVLLELITSKECVTLHGLSREGITMVSRIMMNNLISKEHEEEKLSLFFDPRLIGNIERKSALMLVKPSLACLNQESESRPNMSEVVSTLWKTLSESHNNCWSEKIVMLKC* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3930 529 ProSiteProfiles LysM domain profile. 171 219 IPR018392 -
Amo16g3930 529 SUPERFAMILY Protein kinase-like (PK-like) 244 518 IPR011009 -
Amo16g3930 529 Pfam Protein tyrosine and serine/threonine kinase 287 507 IPR001245 GO:0004672|GO:0006468
Amo16g3930 529 Pfam LysM domain 173 214 IPR018392 -
Amo16g3930 529 ProSiteProfiles Protein kinase domain profile. 254 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3930 529 Gene3D LysM domain 171 216 IPR036779 -
Amo16g3930 529 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 215 514 - -
Amo16g3930 529 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 200 - -
Amo16g3930 529 Gene3D Transferase(Phosphotransferase) domain 1 322 525 - -
Amo16g3930 529 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 1 200 - -
Amo16g3930 529 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 215 514 - -
Amo16g3930 529 CDD LysM 172 214 IPR018392 -
Amo16g3930 529 Gene3D Phosphorylase Kinase; domain 1 228 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3930 Amo-Chr16 151101817 151103878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3930 241 515 Receptor kinase-like Gene Family AT2G33580 36.213 8.77e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo16g3930 PK_Tyr_Ser-Thr 1.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3930 - - aip:107647804 585.104