Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3913 ATGTATCAACCCCATCCGACGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGGATTTGTGCTGGCTGCCATACTGAGATTGGTTATGGACGATACCTAAATTGTTTGAATGCTTTCTGGCATCCTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCATTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACATGATAACACTCCTAGATGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGACTGGATATATCGGTCTTAATGATGGCCAGAAGCTTTGCTTAGAGTGCCTCGACTCTGCTATCATGGATACAAGCGAATGCCAACCGCTTTATGTCGATATACAAAGATTTTATGAAAGCTAG 519 0.4355 MYQPHPTVPIPVPVYFPMGSRICAGCHTEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGQKLCLECLDSAIMDTSECQPLYVDIQRFYES* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3913 172 PANTHER PROTEIN DA1-LIKE 11 172 - -
Amo16g3913 172 CDD LIM_DA1 23 75 - -
Amo16g3913 172 Gene3D Cysteine Rich Protein 17 95 - -
Amo16g3913 172 ProSiteProfiles LIM domain profile. 21 81 IPR001781 -
Amo16g3913 172 SMART lim_4 22 74 IPR001781 -
Amo16g3913 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 48 - -
Amo16g3913 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 104 - -
Amo16g3913 172 Pfam LIM domain 23 77 IPR001781 -
Amo16g3913 172 ProSitePatterns LIM zinc-binding domain signature. 23 57 IPR001781 -
Amo16g3913 172 PANTHER PROTEIN DA1-RELATED 2 11 172 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3913 Amo-Chr16 150908097 150911116 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3913 LIM 3e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3913 - - mnt:21404090 340.117